Chr:
Chr4
Start:
21826083
End:
21827703
Strand:
+
Ref_name:
LOC107280679
Sequence
(XR_001545226.2):
GACAAAGAAAAUCCCUAGUCAAUCCAAAGCGGUUUGGAUCAUACGAGCAAUCCAGUCAGUCAAAAAUAAUAAAAAUCAGUGGGCUGCACUUGUGACUUGUGAGCAUCUUCUUCUCCUUUUCCUAUCUCUCCUCUGCCUCUCACCUACCUUUGUUUUUGUCAUUCUCCGUCCUCCCCCAUGCGGCAGCCGCUACUGGUGAAUGCGCGAGCUCUGAGCAACGAGGAGUUCAAGCUCGAGGCGGCGCGGUUGGUCCGAGAGACGGCUAGUAAAUGAAACAACGGUGUUGCCUCUCGGGAUCAAGCUUGGUGGGGGCUGGAGCUUGAUGAGGAUGUCCCGACGGAUGCAAGCGAUGCAGAUCCCGACCGGCAGCGCCACGGCGGUAGGACCAAGUGGUAGCGUCCCAGUGACUGGAUCCAGUUGCAGAGGCCCAAGGCAUUGGCAAAAUUUGCUACAGUACAUCGAAAUAUUACGGUCUUUGCUGUGAGACAUCCGAAGAUCGUGUAUUUGCUCGUGGACAAUGUAAAAAAAGUGAGAGCGACGGCGGCCGGCCCGAGCCGGGACGGCUCGGCCACGACGGGGCGGCGCCGCCGGCGACGCCCUCCGCGUCGGCGCGGUGCGCGGCGGCGGUGGCGGGCUCGACUUCUUCGCGUCGCGCUCCCACGCCGCCCGCCUUGUCGACCUCGUCACCUCGCCGUGGCCCGCCCACGUCGUCGCGUCCAAGCACGCCGCCUCCUCGUCGCGUGCUCUGCGGCGAGCUGCCCGAACAGCACGUCAUCGGCAUCAUCGAGGAAGCCGCGCACCGCGUCACCAUCUUUGCUUCGUCGGCGGCUUUGUGAAGGGAGGCUCCACUCUCGUCAUGCGGCGCGACGAGCGGAGCCGAUUUGGGGCUGCAGGAAGCAGCCAUCGAGUCGAGCGGUCGCGAGGGAACAAAGCUCACUAGCUUGAGCGGCCACAUGCCGCGUUUCUUUCUUCUCCUCUCUUUUCUUCUCCCGCGGGUGCUGCUCCGCCACGCGUGCGUUGUCGAGGUGAAUGACGAGGUUGUGCGCGUCAACGGGCCACGGCCGGAGCCGAGGAGCACGCCACUGUUCCCGACCACGGUGCAGGUCAGGUAAUGGUGCCCGAGGAGGCCCGUGAGGUCCCUCAUCACGCCGGCCACAUUCCUCCCGCGGCAGCGGCGAGCGGUGGGCGGCGAGGAACGACCCAAGCGACGUGCGAAACGAGGCGAGGAGCUUCCCGUCGGGGGGCAGCACAUCCACCGGGACGCGGUGGCCUGCGAAGGUAGCAGGCCAGCAGCACGCACGCAGGAGGAAGAACCGAAGAAGAUGAACAUAGAAAUAGAGAAAGAGAGAUUGACAAGUGGGCCAUGGGCAAACUUGUCUUUAACCAAUGUUUCUUUCUCCAUUACCACCGAAAAUAAUAAAAUAAUGAGGUGGGUGUUCAGCAACUAAUUACCAUAUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.66%
ME_num:
MEP:
45.12%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.76
Avg Expression:
2.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.60664363436788 | 0.0175197685455582 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.01835317790185 | 0.0333697735526323 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.38719735540902 | 0.0193619484228499 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.4400728815728 | 0.0166075866987118 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.58746344776323 | 0.0124364946247445 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.5352942008309 | 0.0429324936706501 |
| 7 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 2.04497626389991 | 0.0370482675401573 |
| 8 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.67635402725927 | 0.00683469981371053 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.44428935184621 | 0.0189411189224848 |