Chr:
Chr4
Start:
35491343
End:
35492768
Strand:
+
Ref_name:
LOC107280669
Sequence
(XR_003241830.1):
CGUCACCGUCCUCGCCGCCGGCCACCCGAACCGCCGACGCCGCUCCGGCCGCCGUUCCUCACCACCGAAGCAACACCAAGCUCCGUUCGCGCCUUGAGUCGACCCGGCGACGUUGACGCCGGAGUUUUGCCGUCGUUGGCCAACAACCACCACCUCCGCCGCUCCCUGGACCUCGCUGCCUCCGUUUCUCUGCUUGAGGAAGAGUACGUCGAAGAAGAAGAGGGUGAGUUUGUUGACGACCAGGUUCAGGAGUUUGCAGAUGAAGGCAAGUUUGCCCCUCCUUUGAUCACAUUGAUUCUAAGUUUUAUUGGGCUAAAUGAUUCUAUUACAAAC
Sequence
(XR_003241831.1):
CGUCACCGUCCUCGCCGCCGGCCACCCGAACCGCCGACGCCGCUCCGGCCGCCGUUCCUCACCACCGAAGCAACACCAAGCUCCGUUGCAGUUCGCGCCUUGAGUCGACCCGGCGACGUUGACGCCGGAGUUUUGCCGUCGUUGGCCAACAACCACCACCUCCGCCGCUCCCUGGACCUCGCUGCCUCCGUUUCUCUGCUUGAGGAAGAGUACGUCGAAGAAGAAGAGGGUGAGUUUGUUGACGACCAGGUUCAGGAGUUUGCAGAUGAAGGCAAGUUUGCCCCUCCUUUGAUCACAUUGAUUCUAAGUUUUAUUGGGCUAAAUGAUUCUAUUACAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.43%
ME_num:
MEP:
30.28%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.94
Avg Expression:
10.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.81571158110907 | 0.00368021369017698 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.99269579712617 | 0.0246400905801553 |