RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280572

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

3282885

End:

3287296

Strand:

-

Ref_name:

LOC107280572

Sequence
(XR_001545156.2):

CUCCUAUUCUAGCCUUCUCCUCCUCCCAGCUGCAUCUCCACACAUCAUUCUCCACCUCUAAGCCGAAGAAACCGAGGGAGGAGGCUCUCAACUUCUCCGUCGCCCUCAUCCUUGCCGCCGGCCGCGAAGAAGACGACUAUUGUACUCUACUCUCCUCACCAUGCCGAGGAUUUAUCCUUUUAAUUUCAUCCUCUAUCGUGCAGCGGAUCGACGGGAACGCCGUCGUGCCCCCGGCACUCCGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGUCGUUCCGACCACUGUAGACCAAACCAAGCCGAGCCGUCGCGCCAACGUCUUCUCCUUGAAGUCUUCCUCAAAAACCCUCAAAAAUCCUAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCUACCGUCUUCUUCACCUCCGGUCGCCGUCGCCAUUGUCGAUUCCGCCUCCUCCGGUGAGCCAUUGUCCGAUUCUUCGCGUAUACACCAUCCCUGGGACCUCACUAACCCCAUGAAAACACAUGCAUGUCAAUUCGAUGAGUGGAUCGAGCCGUUGCCGUCUUCCCGGAGCUCUACACCAUCGCCGGACCAUCUUCUUCACCGCUGCCGCUGUCCAGACUUUCCCGCGCCUCGUUCAAGGUUCGAUGCAAGCGAACUUGUAGAUUUUUGGAUCAACAUCUCAACACCAGAAAUUCAUCGGAUCAAAUGAUGGCAUAGUUGAUCAGUCCUGCUCGAUCUAGUUCAGCCCUGCAGAAUCGGGCAGAGUCAACGUGAAAAGACAACAACAACAUUGUUUGAUUAGCGCCUCGGCCAUGGCUGAUGUCUGUAGAUUCUGACGGAAGGUUGGUUAGAGAUUUGUAUUACAGCAUCUGAUCUACUCCCUCCGUUUCACAAUGUAAGUCAUUCUAGCAUUUCCCACAUUUAUAUUGGUGUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUCAUUAAUAUCAAUAUGAAUGUGAAAAAUGCUAGAAUGACUUAUAUUGUGGAACGGAGGGAGUACAAAACUAUCGAUACAAUACUGCAUUGGGUUGCACCUUGAUGUGCAGAGCAUUACCGUACCACAUUUGAUUGAUUUGAAGGAAAUUACGGAAGUAUAAAGAACAUGUAAACAGAGCAGAUAAUUACAGGAUUAGAUCGAUUUGUAGACCAGAUAAUUACAGCAAAAAGAUGAGGACCAGCAGUACCUAUCAGUGAAA

Sequence
(XR_001545157.2):

UCAAACUCCUAUUCUAGCCUUCUCCUCCUCCCAGCUGCAUCUCCACACAUCAUUCUCCACCUCUAAGCCGAAGAAACCGAGGGAGGAGGCUCUCAACUUCUCCGUCGCCCUCAUCCUUGCCGCCGGCCGCGAAGAAGACGACUAUUCGGAUCGACGGGAACGCCGUCGUGCCCCCGGCACUCCGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGUCGUUCCGACCACUGUAGACCAAACCAAGCCGAGCCGUCGCGCCAACGUCUUCUCCUUGAAGUCUUCCUCAAAAACCCUCAAAAAUCCUAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCUACCGUCUUCUUCACCUCCGGUCGCCGUCGCCAUUGUCGAUUCCGCCUCCUCCGGUGAGCCAUUGUCCGAUUCUUCGCGUAUACACCAUCCCUGGGACCUCACUAACCCCAUGAAAACACAUGCAUGUCAAUUCGAUGAGUGGAUCGAGCCGUUGCCGUCUUCCCGGAGCUCUACACCAUCGCCGGACCAUCUUCUUCACCGCUGCCGCUGUCCAGACUUUCCCGCGCCUCGUUCAAGCCCUGCAGAAUCGGGCAGAGUCAACGUGAAAAGACAACAACAACAUUGUUUGAUUAGCGCCUCGGCCAUGGCUGAUGUCUGUAGAUUCUGACGGAAGGUUGGUUAGAGAUUUGUAUUACAGCAUCUGAUCUACUCCCUCCGUUUCACAAUGUAAGUCAUUCUAGCAUUUCCCACAUUUAUAUUGGUGUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUCAUUAAUAUCAAUAUGAAUGUGAAAAAUGCUAGAAUGACUUAUAUUGUGGAACGGAGGGAGUACAAAACUAUCGAUACAAUACUGCAUUGGGUUGCACCUUGAUGUGCAGAGCAUUACCGUACCACAUUUGAUUGAUUUGAAGGAAAUUACGGAAGUAUAAAGAACAUGUAAACAGAGCAGAUAAUUACAGGAUUAGAUCGAUUUGUAGACCAGAUAAUUACAGCAAAAAGAUGAGGACCAGCAGUACCUAUCAGUGAAA

Sequence
(XR_001545158.2):

UCCUAUUCUAGCCUUCUCCUCCUCCCAGCUGCAUCUCCACACAUCAUUCUCCACCUCUAAGCCGAAGAAACCGAGGGAGGAGGCUCUCAACUUCUCCGUCGCCCUCAUCCUUGCCGCCGGCCGCGAAGAAGACGACUAUUGUACUCUACUCUCCUCACCAUGCCGAGGAUUUAUCCUUUUAAUUUCAUCCUCUAUCGUGCAGCGGAUCGACGGGAACGCCGUCGUGCCCCCGGCACUCCGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGUCGUUCCGACCACUGUAGACCAAACCAAGCCGAGCCGUCGCGCCAACGUCUUCUCCUUGAAGUCUUCCUCAAAAACCCUCAAAAAUCCUAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCUACCGUCUUCUUCACCUCCGGUCGCCGUCGCCAUUGUCGAUUCCGCCUCCUCCGGUGAGCCAUUGUCCGAUUCUUCGCGUAUACACCAUCCCUGGGACCUCACUAACCCCAUGAAAACACAUGCAUGUCAAUUCGAUGAGUGGAUCGAGCCGUUGCCGUCUUCCCGGAGCUCUACACCAUCGCCGGACCAUCUUCUUCACCGCUGCCGCUGUCCAGACUUUCCCGCGCCUCGUUCAAGAUGCAAGCGAACUUGUAGAUUUUUGGAUCAACAUCUCAACACCAGAAAUUCAUCGGAUCAAAUGAUGGCAUAGUUGAUCAGUCCUGCUCGAUCUAGUUCAGCCCUGCAGAAUCGGGCAGAGUCAACGUGAAAAGACAACAACAACAUUGUUUGAUUAGCGCCUCGGCCAUGGCUGAUGUCUGUAGAUUCUGACGGAAGGUUGGUUAGAGAUUUGUAUUACAGCAUCUGAUCUACUCCCUCCGUUUCACAAUGUAAGUCAUUCUAGCAUUUCCCACAUUUAUAUUGGUGUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUCAUUAAUAUCAAUAUGAAUGUGAAAAAUGCUAGAAUGACUUAUAUUGUGGAACGGAGGGAGUACAAAACUAUCGAUACAAUACUGCAUUGGGUUGCACCUUGAUGUGCAGAGCAUUACCGUACCACAUUUGAUUGAUUUGAAGGAAAUUACGGAAGUAUAAAGAACAUGUAAACAGAGCAGAUAAUUACAGGAUUAGAUCGAUUUGUAGACCAGAUAAUUACAGCAAAAAGAUGAGGACCAGCAGUACCUAUCAGUGAAA

Sequence
(XR_003241752.1):

UCUAGCCUUCUCCUCCUCCCAGCUGCAUCUCCACACAUCAUUCUCCACCUCUAAGCCGAAGAAACCGAGGGAGGAGGCUCUCAACUUCUCCGUCGCCCUCAUCCUUGCCGCCGGCCGCGAAGAAGACGACUAUUGUACUCUACUCUCCUCACCAUGCCGAGGAUUUAUCCUUUUAAUUUCAUCCUCUAUCGUGCAGCGGAUCGACGGGAACGCCGUCGUGCCCCCGGCACUCCGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGUCGUUCCGACCACUGUAGACCAAACCAAGCCGAGCCGUCGCGCCAACGUCUUCUCCUUGAAGUCUUCCUCAAAAACCCUCAAAAAUCCUAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCUACCGUCUUCUUCACCUCCGGUCGCCGUCGCCAUUGUCGAUUCCGCCUCCUCCGGUGAGCCAUUGUCCGAUUCUUCGCGUAUACACCAUCCCUGGGACCUCACUAACCCCAUGAAAACACAUGCAUGUCAAUUCGAUGAGUGGAUCGAGCCGUUGCCGUCUUCCCGGAGCUCUACACCAUCGCCGGACCAUCUUCUUCACCGCUGCCGCUGUCCAGACUUUCCCGCGCCUCGUUCAAGCCCUGCAGAAUCGGGCAGAGUCAACGUGAAAAGACAACAACAACAUUGUUUGAUUAGCGCCUCGGCCAUGGCUGAUGUCUGUAGAUUCUGACGGAAGGUUGGUUAGAGAUUUGUAUUACAGCAUCUGAUCUACUCCCUCCGUUUCACAAUGUAAGUCAUUCUAGCAUUUCCCACAUUUAUAUUGGUGUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUCAUUAAUAUCAAUAUGAAUGUGAAAAAUGCUAGAAUGACUUAUAUUGUGGAACGGAGGGAGUACAAAACUAUCGAUACAAUACUGCAUUGGGUUGCACCUUGAUGUGCAGAGCAUUACCGUACCACAUUUGAUUGAUUUGAAGGAAAUUACGGAAGUAUAAAGAACAUGUAAACAGAGCAGAUAAUUACAGGAUUAGAUCGAUUUGUAGACCAGAUAAUUACAGCAAAAAGAUGAGGACCAGCAGUACCUAUCAGUGAAA

Sequence
(XR_003241753.1):

UAUUCUAGCCUUCUCCUCCUCCCAGCUGCAUCUCCACACAUCAUUCUCCACCUCUAAGCCGAAGAAACCGAGGGAGGAGGCUCUCAACUUCUCCGUCGCCCUCAUCCUUGCCGCCGGCCGCGAAGAAGACGACUAUUGUACUCUACUCUCCUCACCAUGCCGAGGAUUUAUCCUUUUAAUUUCAUCCUCUAUCGUGCAGCGGAUCGACGGGAACGCCGUCGUGCCCCCGGCACUCCGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGUCGUUCCGACCACUGUAGACCAAACCAAGCCGAGCCGUCGCGCCAACGUCUUCUCCUUGAAGUCUUCCUCAAAAACCCUCAAAAAUCCUAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCUACCGUCUUCUUCACCUCCGGUCGCCGUCGCCAUUGUCGAUUCCGCCUCCUCCGGUGAGCCAUUGUCCGAUUCUUCGCGUAUACACCAUCCCUGGGACCUCACUAACCCCAUGAAAACACAUGCAUGUCAAUUCGAUGAGUGGAUCGAGCCGUUGCCGUCUUCCCGGAGCUCUACACCAUCGCCGGACCAUCUUCUUCACCGCUGCCGCUGUCCAGACUUUCCCGCGCCUCGUUCAAGGUUCGCCCUGCAGAAUCGGGCAGAGUCAACGUGAAAAGACAACAACAACAUUGUUUGAUUAGCGCCUCGGCCAUGGCUGAUGUCUGUAGAUUCUGACGGAAGGUUGGUUAGAGAUUUGUAUUACAGCAUCUGAUCUACUCCCUCCGUUUCACAAUGUAAGUCAUUCUAGCAUUUCCCACAUUUAUAUUGGUGUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUCAUUAAUAUCAAUAUGAAUGUGAAAAAUGCUAGAAUGACUUAUAUUGUGGAACGGAGGGAGUACAAAACUAUCGAUACAAUACUGCAUUGGGUUGCACCUUGAUGUGCAGAGCAUUACCGUACCACAUUUGAUUGAUUUGAAGGAAAUUACGGAAGUAUAAAGAACAUGUAAACAGAGCAGAUAAUUACAGGAUUAGAUCGAUUUGUAGACCAGAUAAUUACAGCAAAAAGAUGAGGACCAGCAGUACCUAUCAGUGAAA

Sequence
(XR_003241754.1):

AUUCUAGCCUUCUCCUCCUCCCAGCUGCAUCUCCACACAUCAUUCUCCACCUCUAAGCCGAAGAAACCGAGGGAGGAGGCUCUCAACUUCUCCGUCGCCCUCAUCCUUGCCGCCGGCCGCGAAGAAGACGACUAUUGUACUCUACUCUCCUCACCAUGCCGAGGAUUUAUCCUUUUAAUUUCAUCCUCUAUCGUGCAGCGGAUCGACGGGAACGCCGUCGUGCCCCCGGCACUCCGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGUCGUUCCGACCACUGUAGACCAAACCAAGCCGAGCCGUCGCGCCAACGUCUUCUCCUUGAAGUCUUCCUCAAAAACCCUCAAAAAUCCUAGGCAAUGGCGCAGCAAGUGCGGAGAUCGGCUACCGUCUUCUUCACCUCCGGUCGCCGUCGCCAUUGUCGAUUCCGCCUCCUCCGGUGAGCCAUUGUCCGAUUCUUCGCGUAUACACCAUCCCUGGGACCUCACUAACCCCAUGAAAACACAUGCAUGUCAAUUCGAUGAGUGGAUCGAGCCGUUGCCGUCUUCCCGGAGCUCUACACCAUCGCCGGACCAUCUUCUUCACCGCUGCCGCUGUCCAGACUUUCCCGCGCCUCGUUCAAGCCCUGCAGAAUCGGGCAGAGUCAACGUGAAAAGACAACAACAACAUUGUUUGAUUAGCGCCUCGGCCAUGGCUGAUGUCUGUAGAUUCUGACGGAAGGUUGGUUAGAGAUUUGUAUUACAGCAUCUGAUCUACUCCCUCCGUUUCACAAUAAUGACUUAUAUUGUGGAACGGAGGGAGUACAAAACUAUCGAUACAAUACUGCAUUGGGUUGCACCUUGAUGUGCAGAGCAUUACCGUACCACAUUUGAUUGAUUUGAAGGAAAUUACGGAAGUAUAAAGAACAUGUAAACAGAGCAGAUAAUUACAGGAUUAGAUCGAUUUGUAGACCAGAUAAUUACAGCAAAAAGAUGAGGACCAGCAGUACCUAUCAGUGAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

252

LEP:

51.22%

ME_num:

227

MEP:

46.14%

HE_num:

12

HEP:

2.44%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.84

Avg Expression:

6.46

Tip: OSA-LNC107280572 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-5.091316081809230.021387429153665
2Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 8_days_after_shift1.497484296961690.0123337025014824
3Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift1.255241751508740.0401780264490093
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.298329475171180.0442424700525211
5Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73312.815995999251710.0041108248538703
6Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day4.295974156897362.29205448883345e-05
7Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-2.552411855584950.000205128450276916
8Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day3.906248728410549.2893875333546e-06