Chr:
Chr4
Start:
11831457
End:
11832858
Strand:
+
Ref_name:
LOC107280569
Sequence
(XR_001545150.2):
UGCUUUUCGUCCCUCUCGCUACAGUGUUGUCUUCAACCCCUAGACAGAGCCGACUGUCUCCAGCCCGUGCACAGUUGCCGCCGCCUCCUCCUUCCAAAUCCGGCCUCUCCGUUGCUCCUUUUUCCAAAUUAGUUGUGGGAAUGGAAUCCUCUCAAUCUCCUCUUCCUUUUCCCCAAGAAAUCCCCAAAAUUUCUAUGGAAAUCCUUUCCAAUUUCGCGGAUCAAUCUUUCCUUUUUCCGGCGAAGAUCCUAAACUUUCCCGAGUUUUUCCCGUCGAUUUGGGCCCGAACCCGAGCUCCUGUGCCUAUAUAAAGGACCCCCUCGUCGUCCUCUACCUAUCCCCUCAAGUUCCAUCUUCCGCCGUCGUCGGAAUCGCUCUCCCCGCGCUCUUCUUCUCUCUCCAAGCGCCGGCGCCGCUCCAGCCGCCCCUAGCCGUCGCUUCGGUCGUCGCCGUCGGUCGCCGUCUCCUUCAUCAGCAUCGCGAGGUCGUCGCCGUCCUCGUCCCGUCCUCCGUUUCCGCCGAAGAUCGCCAGAGCGCCGCUGACACUGUCAACCCGAAGCUCGCCGCCGCAUUUUGAUCUCCGGCGAGGCCACUGCUGCUCCUUCCGUCGUCGCCAAGCUUUGCCGUCGCCUCCAUUGGAUUCGCAGCUGCGAAGUGAAGCCCGGCCACCCCUCCGUUGUUGCCGCACAUCGCCGGAAAGUCGUCGCCGCCGUGGACAGUACCUCGCCGCCCUUCGAAGCUCGUCGCCGGCCAUCUUCCGUCGCUGUCCGUCAUCGCGUAAGUGUUGCGUUGUCAUCUCCGUGUGUUGUAGCCGGACCGUCAUUGUCGACCCUUUCUCUCUGAUCGCUUUGGUUCGCUUGUCGUUUCGAAGGAUCGUGAGUGCGUCGGAAGUGUUCAAGAAGAUUAAUUGAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.07%
ME_num:
MEP:
31.91%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
2.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.81824721929862 | 0.0110587229732719 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.25105452574341 | 0.0315848732785189 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.75338254917614 | 0.00940331363456685 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.997841463456 | 0.0152203012121336 |