Chr:
Chr4
Start:
901907
End:
904389
Strand:
-
Ref_name:
LOC107280550
Sequence
(XR_003242101.1):
CAAACUUAGGGCCUUUUUGAAACGUGGGAUUGGAAAAACUUAGGAUUUUGACAAUAAUGAGGAUCCCUUUGAAAUGCAUGAUCGAAAAAAUUGUAAGAAUAGGAAAAACAAAGAAAUAGGAUAUGAAACAUAUGCAAAACAGAGAAUUGGAAAACACAGUGUUUGAUUGGACCGUAAAUGGGUCUGUAUUAUUGGAGUUAAUUGAGUUGGUUAUUUACUUAUACAUAUCUAAUCUACACUAAUUGAAUAGAAAAGUGACCAUGAGCUACUAGAUUUGUCUCGAUCCUAAGCGAGAUAGCUAGAACUUUAGCUUAGAGUGAAUGUUAAAUUUCCUAUAUUUUUCCUCCAGAAUCAUAGGAAUAGGAAAGUUUCCUACAUUUUUCCUUUACUCAUUCCUAGCAAUUAAAGGCAUGAACAGUGUACGAUUUUAAUUUCUUUGUUUUUCUUCCAUUUUUCCUCCAAUUAAAAGGGGCACUGAAAUAAAGCAUUGCAAAACACAGAAAAAUAAUAAGAAUGGUCGUUUGAUUGGAUCACAAGAAAAACACAGGAAUUAGAGGAGAGAUAAAAAGUCAAAAGAAAAUUUCAUGAGAUUCUACUUCAUAUUAAAUUUCCUCCAAAACUUGCAUGGAAGAGGUAUUCCAUAGGAUUCAUUUGUGUCUAUUCCUUUUAUUCAAGGAGCUAUCUACUAGAAAAAUAAUCCUAUGAGGAUAAAAUUCUCCAAAAUUCCUACAACUUCCGUUUGAUUCAAAAGUGGGUCUUAAUAAUUACUAGUCAUAAGUCUAGUCACCUCAAUCUCACAAAACGAGAGGAAAAUUUUGAACCGGAAGCAGUAGUGAGCCACCAACUAGCACGGAUACAAAACAAAAUCAAAUGUCAAAUAAUUUGACUGAGAACAACGAUAAUUUCUUACUCAAGUGUUAGCCCAUGAUUCAUUGAUUCGUGAACGCCGUUCGUGCAGGUUUAUGGCCCCCCAAAAUUAAAUGUGCAAAAAAUUAGGUCGACUAUGGAAGAUAAUAUAGUGCGAACACAUCAAUUUGUCCCAUACGCAUGUUUCCUGAUCAACACAAAUGAUUUAAGAAUAGAUCUCUCAGGCCUCGUUCUUAUAGGCUAGGUUUGGGGGGAAUGGGCCGAAAUCCCCGUGUGCCAUCCCGGCCAGAUCUAAUUUUCUUCCGUGGUGCAUGUACGCGUUCGCCUGGCCCGAGGUGGGGUGGGGGAAAUUCUCCACCCGAUCCAUGCCAAACCCCCGGUACAGAAAAAUCGUCUCGGAGACGAUUUUUUUCUUCCCGAGCAUACACGGCGCUCAUCUUCCUCGACUCCUCACGGCGCUAGGUUUGGAGGCGGCGCGAGGUCCGGGAGCAGCAUAUCUCCAGCCACCACUGGUCUCCUUCCCGCCCUCGGUCACCGCCGGUCUCCAUCCCGCUACAGCCGCCGCCGCUCGCCAUCUCUCCUUCCUCGCUUCGGAUUCACCGGUUGCGGGAGAGGGCAAGGUCGAGGGCAACAGCCCGGACAUCAAGAAGCAGGUCCUACAUUAUUGGUUGAUACUCCAAGAAACACAAAUAUAACAGAACUACGGAGUACGGACAAAUCGACAUAUAACUCAUUUGUGUUGAUAUUGCAACUGUUGGCAUUGCAAGUUCUGUGCUUAUAUUCAAGGAUUAACCUUUCAGGGAAGAACAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.07%
ME_num:
MEP:
32.72%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.76
Avg Expression:
1.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 2.81071150194521 | 0.0457732166281567 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.20507283398762 | 1.95374093435171e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.36906956488302 | 3.67634976098414e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.04351105431779 | 1.73471147732864e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.4404847449742 | 0.00790717753369733 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.41464355264155 | 0.00683932937812128 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.15712978567746 | 9.42046899475069e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.79178674377227 | 0.000217598765236726 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.43044968439837 | 1.1216322047303e-06 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.60480893869309 | 0.00539297619108119 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.87323080928488 | 0.000387591517756785 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.30613440359891 | 9.60847694252455e-07 |