Chr:
Chr4
Start:
15882985
End:
15887260
Strand:
+
Ref_name:
LOC107280546
Sequence
(XR_001545082.2):
UCUAGAGCAACUAAGAGAAGGAGAUCGAUAGACGAUCAUAUCGUGAAGGCUAAAUGGAGAAGAGAGAGAGUACAGCUUUGGGCGGUUUAGUUGUUAGAUGGUGGAAGUACUUGCGACGCCUACUACCCUUUUCACCAAGGCUGUACGCUCCCUCUUCUUCUCUUAGCUUUUUAUGAUCCACACACAUAUAUACAUGAACUCUCUCUCAGCCGGCUCAGCUGAUAAUUUAUUUUACUCUUGGUACCAUUUUCUAGGCUUCAACUAAAUGUGUAUGUGUUAAGAGCAAGUCUAAUAAAAGCGCUCGCUGCUGGCUCCAAUCCUUCUCACGUCAGGUAAAUAUAAUAUAAAAGCAAGUACAUACAGUAGGUAGGCUCUAAUACAUUUACCCAUCUCUCCAUAUAAAUAAUGUUUUAUUCUUUAUUUACUUUAUCUUCUCUUUCCUUUCAUUUCUAUCUCACUUUUGGAUGGUGCAGAGAUCAAAUGGUGAGACUAUUUUUUCUUAGAGUGCGUGUGGCACUAGUGGCAAAUUAGUCAGCAACUGAUGGUCUCUCUCCUCUCUUUUUUCGCCAACUCAGCGUUCAUGCUUACGUGGAGUUUUUUCUUCCAGCUAUCUGAACCCUAUUGUACCUGCUCUAACUUGAUAGGCUAUAACGCUAUAAAUAGUCUUUGUGGGAUAAAUUUUUAAUAGUACAAAUGAAGCUGCAACAUAGGUAUAUUGAAUCCGUUGCUUUUUAAUUAGGAAAUGGGUGUGGAAUUUCCAGCCGAACAUUAUUACAGGAAAAACGCUUUGUAGAGACAUUUUUCUAAUACUAUAGAGACACUUUUAAAAUGCCUUUACAAUACUAUAGAGAUAUAUUAAAAAAAUAUCUAAUAAUUGCCUUACGGUGAAUUAUCUGUACAAACGAAGAGGCAUUUUAUAAAAUGUCUAUAAGAUGGUAGAGGCAUUUUCUAGAUACAUUAAAUUGUACCACAAUAAUAUGAAAUUAAUGAAAAAAUAAAAUAAAAUAAAAUAUUUUCUCUUGUUUUUGCAAUCCUUGAACUCAUGAUCAAUUGCACAAAUCAUACUUAUCUUCAAGGCACUAACCAACUCAAUCCCAAGUCAUCACUUAUAUGUAUUUGUCUUCAGUUACUUAUAUUUAGUCAUUUAGUAUAUAUUUUUAUUCUAAGAAGUCUCUUUACAGAGUUUAAAGUGUCUCAAUGGUUGAUAACGAGAAGAAAACGAUAAAAUUACUAUUGAAGAGGUCUAUAAAACUAAACUCUAGGGACAAAUCUUUAGUCCAAAGACUACACAGGACACACGGAGUAACUAGUUAACUGAUUAUAUGCAAUAUCGUUUAGAAAGGGAAGUGUCUAAGAUGGAAAAUUCAAGGCAGGAUGGCCACUUUGCAAAUUGAAAUGUUCCUUCCAGCUGUUAUGUUCAGGGGUGGAUCCAACGUGGUGCAGGGGGACUUAGGUUCCCCUACACCCACAAGACCCAUGGAUAUAUACCCGCAGAGCGCCCCCUCUAAUUUUUUCACCAUGAAUGAUAAACUAAAGCUUCCUAAAUGGCUGGAGGUUGAAGAAACUGUAUAAUUGAGUCCCUUAAUUUUUUGUUCCUAGAUCCGCCUCUGGUUUACGUUGACAGUAAGAAAGAGAGGUUUACCUACUUUUUGUCGUAUAACCCAAAACUAUAGGAGCAAUUAAUAUGCUAAGUCAAUGGUUAGGGCUAUCAGCGAGCCGAGCUUGCUCGUCUGGGCUCAAGCUCGACAAAGCUCGAGCCGAGCUUAAUUCUCUUUUGAGCUUUUAAGCAGGCUCGGCUCGAGCUCGUUUAGGCUCGCGAGCUCGAUCGAUUAUAGGAUAAUGUAUAUUUUGUUGAUAAGAUUUAGUAAAAAAAAUUUAAUCAAUAAUAUUGAAGAUAAAGUUAUAUAUGAUGCCAAAAUACACUAAUUUUUCACAUGAAUAUAUACUAAUUUGUCCUUGAGCUACUAACUUAUCAUAUAAAAGAUAAAAAAUUUACACACAUAGUUAGACUCAUAAGAAUCUCGAGCUUGGCUUGACAAAACUCGUGAGCUUGCAGCUAGGCUUUGGUUCGGCUUGUUAAGAGUUCGAGCCGAGCUCGAAUCGAGUCUGAGGUGACUCACGAGCCUCGAGCUUUUUUUGAUAGCCCUACGGGUGAUAGUUAGCAAUUCAAAACGAGUCACGUCGCACGCAUAAGCUCUUACACAUGCUCCUGCUCCCACCCAUGCAGUGACGCUUAGGAUCUGUUUGAGAAAGUUUUUGGCAGGUGCAACUUCUCUUAUAAUCAUAAGCUCUCUAAACAGUUGACAUUUUCGUUUAGAUCCUAAAAAGCUAUAGCUGUUGAAUCCAAAAAAGAAUAAAGUCGGAAGCUGGGAACCCCGACUUUUCUAUAUUCUAAAAACUGAUUACCAACCAGCAGCUUUUUAGAAUCUUAAUCUCUUCUAAACAAUACCCUUACAUACUACAGUUACAUUGUUAUAGCAUUAACCUUAUAUAUGUGAGUGGCCAUGCAGAGCCCAGGUAGCAUCACUACAAAGUAAGAAAUCGACUGAUCCGGCCAGCCAUGCAUGGCAGCGGCAGCCGGCUUCUCGGGGACGGCGGCAGUGGCGGUGCCUCACGUCACGUGAAGCUGGGCUCGCAGGGGCCGGAUAUCUCAACGCAGUGGGCCUGGGCUGCAUGGGCAUGUCCGCUUUCUACGGCCCGUCCAAUGCCGGAGGCCGACAUGGUGGAUUAGAAAAAAAAUAAUUCUCUUUUUCUGAGUAAUUCUCUGUUCCAAAUAUUCGUUGGAAGUAGAUAGACACGUUCUAAAAUCUUAAUGCAUGGGCGUAUGUCAUCUUGAUUAAAAAAAAAACAAACUUUUUCGCCACUCCAACAAAGGCGGGAGCAUAGAUAUGGGAGAGCUAGUGAUGUUUUAACUAACAUCGAGGUUUGUUGGUGUGUUGAUGUUUUUGCAAUCAGUGGCAGAGUUUCCGUCGAUGCCGCGGUGGCCGCCGCCGCAGAUCGCCGGUGAUGGCCGGGAAACCCAACAGCAAACAGUUGUCGCUGCAGGAUGGCGUGAUGAUCUCCAACGACGACGGCCCAAGAAGCUUAAUUGGGAAUCCGGAAAGUUUUGCGUUGAGAAUGAACACCUCAAGGGCUCGCCAACCACUUCCACUAGCUGCUGCCUCUUCCUCCCUCUUCUCGACCGUCUCUAUCACUCGUUUCAAGAGUGAGGGUACUCCGCAGUACUGCUCACUGACAUGUACCAGUCCCACAUGAUAUGUGCCAGAUGAUCUGGAUUGCUCGUUUCAAAUACGAGCAGCGAAGUUUGUAGAUUUUGUUGAAUUGGAGUAAUUGAAUUGGAUUGAACAGCAGUGUUUUGAUUAGAAUCAGUUUUACAUACACAAUGAAAUAACUGACACAAGAAAUAUUUUUUUUUUCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.13%
ME_num:
MEP:
15.24%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.92
Avg Expression:
3.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.26966191439652 | 2.23860946269305e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -6.36379716414482 | 1.1359541732199e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.55039280609556 | 0.000113622209254614 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.09466741010091 | 4.65847339622366e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.77509462134392 | 0.000126092819523371 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 4.05412974237904 | 0.0458600038371371 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.47937276466588 | 0.0118840262710035 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.62129666355401 | 3.91514115364178e-06 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.47600377938343 | 0.0049768442712395 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.35883628436851 | 1.01975516895886e-15 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.7523606804688 | 0.00177574039779167 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.79612606268537 | 0.0239975384761879 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.86044962312933 | 4.73453451459171e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.93956372027353 | 0.000106241282710696 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 6.07534142215012 | 5.83276190221318e-06 |
| 16 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 7.88048702872195 | 2.70615997828429e-08 |
| 17 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -2.52598851391592 | 1.53035106366194e-06 |
| 18 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.20771562184621 | 0.00256615012837183 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.40707016337137 | 0.00117211332332705 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.32217639701454 | 0.00519183999248036 |