Chr:
Chr4
Start:
6569295
End:
6571629
Strand:
-
Ref_name:
LOC107280543
Sequence
(XR_001545075.2):
CUACCAUUAACAUCCUCGAUUUUUAAUGUAAAAAUUGAAUGCAUCAUGCUGAGUUUUAUUCAUAAUCUUUUAUUUAAUAAAAAAAUCCUUUUAAAAGCUUUUACCUUAAAAAGAGAAAAGAGGGUUUGAAUUGAAUUAUAUAGUUCAAGUAUCUCCCUUUCAAUCGUAUUACCAAACCUGCCUGGUGGUAUUGCAAAAAUAUCAAUUCUAUUCAUCCAUCUCAAGUUCUGAAUUUCUUUUAUAAAAUCCAAACUCCUUCUAAUUUAGGUGUUAUUCUAAAUCCUUUGCAAAUUCAAAUAUUUUCUGAACUAGUUCUAUGAGUGCACUCUUAAGUACCUCAAAUAGGUUUAGAAACCUUUUUCUACCCUUAACCUAUCCAAUCUUGGAUAUAACCACUAUUUUCCCAACUAGUUUUUGUCAAAAACGAGAAAGAGUACCUGAGUGGCCCAAAUUUUGAUCCAAAACCUUUUUUUAACUAAAUUUAAUCUCUAGAGACCUAAAUCAGCUUGUUCAAGUCCUCCUUUGCUCCCUAAACCGGCGAAGGAUUUUGUGGGCCACGGUGCGCCGUGUCGUGCCCACACCACGCCAACGCGCAUCGACACCCUCCUCCAUCACGCGCGUGCAACCACAAUGGCGCAACAUCCAUCUAUCCACCGCGCCUUGGAUACCCUACUUUCUAAGCACUAAUCUUCCCGCGAUGGAACCGGCAAGCCAAUCGCGGAGCGAUCUCAUGUGCGUGCCGUGCCCGCCACUCCUCCUCCGCUGGCCGCCAUCCUUCGACAUGGAGACAUCCCAGCGAGAAGCCCAACCAAACCAUCACCUUUCAGAGCUCAAAGAAACAUAACUUUUCCCUCUCACAUCCCCAAACAUGGCGCCGAUGAGCCGGCCGUUUUCCUCAAUGCCGCCAUUGCACGUCACACUAGGAGAGCGCCACCUCGCCGCCGCCUCCUAGGCCGUGAUUUAAAUCCCUUCCGCCACCACUUAAAAUAGAUCAUUCGUCAUCCAAUUUCACCUUCUCCUCCCUCUCUCAGCCCUCUGUUCCUAAUGGCACUAAACUCAUCCACGGCACUAAUGGCAGCCGAGUGCCGUUAUCCACCAACCAUCACCACACCAUCACACCAAAGCUCUACAUCUCCAUACAUUGCUAAGGUUGCUGUGGAGCACUGGUCUUAGUGUGCGAUCACGCUGCCGCCGCUCCAAUCCUUUCCCAGCCCCGAGAACAAGUUGAACAUCGCUUACAUGCUCUGUUUUGAUCCUUCAUCGCUACCAACUUGCUCUGUUUCGGAGUUCGAGUGCUGCCACCAGUUGCAUUUCAUUCUCCGACCAAAUCCCGAUGUGAGUCAAGAGGAGGACCCUUAUGACUACUAAAGAUUUCUACUUCCCUAGUCAAAAUAAAGUAGAACCUCAUCCAUCAUGGUUUGUAUCAAAUAUUAUCUAGCUAAAACUCUCUAUGUAAUAUUAUACCUCUUGUAAUUUGUACAUGUGUAAUGAACAUCCGGUUGUAAUAUCUGUAUCAAUGUUAAUGAUCCAGGGUUGAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.54%
ME_num:
MEP:
23.17%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.96
Avg Expression:
17.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.09514944763188 | 1.8227978954894e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.04190314576093 | 1.3288378841354e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.28376053736704 | 8.16065198998992e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.77041279257886 | 7.21275931924047e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.97040297515129 | 3.8559316456795e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.84660127976901 | 5.31634044471939e-13 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.32099421646023 | 2.5980677519045e-15 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.08419179088306 | 0.0404069670868258 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.89917650699893 | 0.016040203764021 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.07884089075505 | 0.001690828374449 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.35711034503176 | 0.0291484639246944 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.40739738445685 | 0.00050738145223117 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.51495767761421 | 0.00322466072725631 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.19809476541331 | 1.83163932659463e-21 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.0917642172463 | 3.44943632902268e-22 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 6.75210376153487 | 3.55137485133402e-07 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -3.41573028413737 | 0.00656488769896379 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.09426868719712 | 1.74034399692378e-15 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.36191217976113 | 0.020418392555951 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.18084373042881 | 3.30680026890096e-25 |