Chr:
Chr4
Start:
4256993
End:
4259643
Strand:
-
Ref_name:
LOC107280540
Sequence
(XR_001545069.1):
CGGUGAUGACGACGACGACGGACCGACCAUGAGGAGGCGGCUGCGGGAGGCGGCUAGGGUGCACAGAGAGGAGUAGAAGCAUCUUGGUUAUAGCGCAUGCCUUGAUAGAGAGUUGUGCUGAAGUCAAAGACAAGCAACCUUUGUUGCUUCAUCACUAGAGGUUCUAGAAAAGUUAUUGGAAUACACUGUUUAGCAUUUGAUAAAGGGGUGCCUAAGAUGCCAAAAGGUAAUACGAUAUUAUCUAGUGGGUUUAUUUCCAUUGAUGCAGAACAGAAGAGUGAAUGAAGGAAAGCCCCUUCUGAUAACCGUUCGAAAAUAAAUGUUCAUGGCACAUUUGCUGGAUAUUUCGGAAAUCCAGAAGUCUGAAUUUUCUGUUCCUUUCCUGAAGCAUCUGUGUGGAGGUACUGAAUUGUUUUUGGCACGUCAAAGCCUCACAAGGACGUUCAGGAGGUAUAUAAAUAUAUACUGAUGGGCAUCAACUUGGCCUUUUUACAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.89%
ME_num:
MEP:
5.08%
HE_num:
HEP:
13.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
15.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 9.42175963872415 | 2.75301812804857e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.43225293603238 | 3.08226499301617e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.51031282151926 | 1.85995038794363e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.77518637529942 | 1.82399551632825e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.49648419350097 | 2.41660566992506e-08 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 7.91158077846934 | 2.21995856822686e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.45770079605082 | 2.62943463520831e-12 |