Chr:
Chr4
Start:
10617224
End:
10619194
Strand:
-
Ref_name:
LOC107280539
Sequence
(XR_003242138.1):
AUUAAUUUGGAUUUAAACUCCAUUCCUCAAUUCCCUACACAAAUUAGAAAGCCUUCCUAUUCAUUUGGGCCCAAUUUUCCCUCUCUUCCUUCGGCCCAGACCGGCCCAAGUCGGCCCAGCACCUCCAACUCAAGCCGACUCCCUGCUCCUCCUCCCGUGGGCGCUUCCAGGCGCCGCCACCGUGCGCCAUUACUGCCGCCGUGCACGACUCAGCUACCGUCGCCUCCAUCUUGCCGUCGACGCGAAGGAACCGCCACCCGGCGUCAGCUACACUUCAUUCCGCCGACGUCAGCAACAGGGAUGAACCGCCAUCGUCGGCCAAUCAGAGGACAGAGCCGGCGCCGUCAUUCUUUCCUCCACGUCGCUGCAGCCGUGUCCUCAUCGUCCUUCUCCUCUGAACCGCCAUCAGCCACCGCCUCUCGCCGCCUAUAAAUAUAAGGCGAGCCCUCCCCUUUUCUCCACACAUCAACAGAGCCUCGAGCUCCCUUUCUCUCUCUCCAUCCAUGGUCGAUCGUCGACGCCGUCGGUCGAUCUCCCCAUCCGUAGCUCCACCUCCCCUAUCCUCGCGCCACCGGCUUCGCCUCCAUCCGGCGAGUCCUUUUUUCCCCUUUCCCCUUUCCCUCCACCUCUAAGUCAAGCCACCACCGCCAUCAUCCAUGCCGGCUCGAGGUGAGCCCUUGCCGCCGCCGUUCCGGCUAUAUAUCUCUCCCUCUUGGCCAUCCACCGACCUUCCCAAGUGCGCGUCGCUCGGGAACACGCGUGGCCGCCGCCUUCGAGGCCGUUCAUCCACCGGAGCAUCGGCGCCCCUCCUCUUCCUUCUCUCUGGAAGAGAAGAAAAAGCAGAAGGAAGGAAGGAGGAAGAAGAAAGAGAAAAGAAGAAGAGACAAAGAACUGACAGCCACUAAAAAGCCGCCGGUUGAAACUUUACGCCUUCCAUGGGGACGUUCGGGGUUUUCUAUCCCCGACGUCAAACCGUUGGUUGUAAAGCCCGGUAUAAACCAAACCUAAGGUCGAAGUGCUGCUCCUGGCACCCCACGCCUUGAUGCGUAUAGCGGUCGGAGCUUCACUAUUCCAUUGACCUCCACAGCACGCCGCACAGUUAGCUCAUGUCGUCAACAUCUUGAACCAGACUAAGACUAUGAUCGCUGCCUCGGUUCCGGCCAACUCCGCAAGUACCCGCACCCCGACUGGUAGCCGAGUACCUCCUCUUCGAUCUCAAGAUUAUCACCAGCCAAGCCUCAGCGUCGCCGGUGCCGGACCUAGUCGCAGGAGCAGGGGACAUGGUGAGCGAUCUGUCCGCUCGCCUCCCGAACGACAUAGGGAGCGUCGAGUUGAACGACCACACUCCCCACAUCGAAGGCGCCCCGUCGAUCUUCGCGACACCAUCAACCAGCGCCGCGCAGCAAGAGGCCAUACUCCCCAUCAUUCACCAGAUCGCUACGACGACGAUAUGGACGGAGUUGCUGCCUUCACAAAUGAUCUGCAUCGAGUGGAUUGGCCAGCCGGCUUUAAGCCGACUGGAAUCGAGAAGUAUGACGGCACCACCAACCCUGAGUCUUGGCUCACCGUCUAUGGUCUCGCAAUCCGCGCAGCAGGAGGAGACAGCAAAGCCAUGUCGAAUUAUCUGCCUGUGGCCUUAGCGGAUUCUGCCCGGUUGUCACAUCCUGAUUUUCGUUUCAGGAUUUAUAAAUUAUUUAAUAAAUUAUUAUUAGAAUUUAUAUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.6%
ME_num:
MEP:
31.91%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
2.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.47078000414878 | 0.000142864377180739 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.46927928189329 | 0.00448398577047921 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.67913330552877 | 0.000179023362574103 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.99983646257781 | 0.00337263131675928 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.93507844112012 | 3.75319989519516e-05 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.45659663279752 | 0.0215865873962775 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.91695573590444 | 1.13818418230982e-13 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.59271040512049 | 0.0300433720596028 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.6510162548758 | 1.6260139074719e-08 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.24684414578962 | 9.1139224247456e-05 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.68963354784425 | 0.00283957832528428 |
| 12 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.45029670886067 | 0.0136584324031793 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.47599918963629 | 1.70753131752484e-40 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.35579892318042 | 1.24654656899529e-06 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.06646129298643 | 4.03472062258784e-06 |
| 16 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.29952569395652 | 0.0122808193000025 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.0892526772242 | 3.50204429093652e-34 |
| 18 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.1702097463989 | 0.000478008705852707 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.28255885545478 | 0.000205868135489846 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.29509725614019 | 0.000414181678981396 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.26323159264277 | 4.91780042366748e-06 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.31514393450735 | 5.41011799833431e-07 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.13458406338704 | 0.00204946298747816 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.86479005404232 | 0.000340260569559909 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.17565423063604 | 0.000804448487336562 |
| 26 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.58197132494503 | 0.000759734055751771 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.03574458196325 | 1.00909308612202e-05 |
| 28 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.58189487034854 | 0.000768685612422637 |
| 29 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.58177779608724 | 0.000762396997118703 |
| 30 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.24910580706305 | 0.00143426085131883 |
| 31 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.74045125590277 | 0.00162189333193531 |
| 32 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.53047586216868 | 0.00020259732252552 |
| 33 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.89961224217201 | 2.17371359066439e-05 |