Chr:
Chr4
Start:
31516243
End:
31526162
Strand:
-
Ref_name:
LOC107280535
Sequence
(XR_003242099.1):
UAGAGAUAUUUUGUUGAACAUUUUGCUUAUUAACAAUCCAUUUCUCAGCAUCAUUCCACUUGGAGGAAGUCUGUCUCGAGAAAUAUCCUGAUGUUGGAUUCUGCGCUGCUGUUUUCUCUCCUCCAUGGAACUCGAAACUACUGGUUGCUGAACUGAACUUUUGGUCAUGUCCUCAACCUUGUUGAUGUCCAAUGGUGGAUCCUUCUCUAAAGCUUCAGUUUUGUUGAUUGCUGAGGAGCAUUUGGAUCCAUCAGAGCUGCCUGAAACUGCUAGAAGAGCAAGAUAGCUGUGUGAUUGACUUGAUCAGGAAAAUUGUUCUUCGAAGGUGAUGUCCGUGAUGAGCUGUUGCUGAUGACCCUCACACGAUUGUGAGUUCCCAGAAGCUUCAUCCUUAGCUUUGUCGGAGAAAGUGCACCAGCCUACAGGAACAACAAAGCAGCCAGUUCAUACAUUUGGAUUCGCCGUGUACUUGGAGCAAAAUUUGGACAUGUGAGCGAUUGGAGCUUGGGCUCUGGAGUACAGCUCUUCUUGCAGUUGCAGCCUUUGCUGCAUCAUCAGAACAAGUGUGAGCCGUGCUGUAGAAGAGGACAGGAACAUACCAGCUGCCCUUUACCCCGGCAUGGGGCUCCAUGUGUCUCUGGUGUGCUGUGACGCUUGCGAACUUGACAUGUGAUGCAGUAG
Sequence
(XR_003242098.1):
UAGAGAUAUUUUGUUGAACAUUUUGCUUAUUAACAAUCCAUUUCUCAGCAUCAUUCCACUUGGAGGAAGUCUGUCUCGAGAAAUAUCCUGAUGUUGGAUUCUGCGCUGCUGUUUUCUCUCCUCCAUGGAACUCGAAACUACUGGUUGCUGAACUGAACUUUUGGUCAUGUCCUCAACCUUGUUGAUGUCCAAUGGUGGAUCCUUCUCUAAAGCUUCAGUUUUGUUGAUUGCUGAGGAGCAUUUGGAUCCAUCAGAGCUGCCUGAAACUGCUAGAAGAGCAAGAUAGCUGUGUGAUUGACUUGAUCAGGAAAAUUGUUCUUCGAAGGUGAUGUCCGUGAUGAGCUGUUGCUGAUGACCCUCACACGAUUGUGAGUUCCCAGAAGCUUCAUCCUUAGCUUUGUCGGAGAAAGUGCACCAGCCUACAGGAACAACAAAGCAGCCAGUUCAUACAUUUGGAUUCGCCGUGUACUUGGAGCAAAAUUUGGACAUGUGAGCGAUUGGAGCUUGGGCUCUGGAGUACAGGCAUGGCUAAAAACUGAAAAGCAGAGAGCAUCUCGUGGGAGGAGGACGAGCUGGGGAGGGAAGGUGAAAAAAGUUGCAGCAAUGGAUGGAGGAUGGCAAGAGCAGGGGGCUUUUUCAGAGGAGAGGGGCAGCAGCAGCAGCUAUAGUCAGCUACGGCAGCAAAGUGCUUGGGCUGAACGGAAAGCCUCGCUAAAGAUGGCCCUUCAUGUUGGCGAGCAUCGCGCAUUUGUGUGCUGCAGCAUGGUUUUUUGAGCUGGAGGUCUGGACUCGAGAGCCGUGGAGAGUAUAGCUACGGCGCAAAUUUACAUGCGGGACCCCACCGACUAAGAAAUGUCAGGAAAGGUCCUUUUUCAGAAAGAAAAUAUGGAGCGGAGGACCCCGUUUUGGCAGGUUUUAAGGCGAACAGCGCGAGAAGAAAACAAAAGAUCCAGUGGUAUCAAGAAUAGUAUGCUGGCAUGUGCACAAACACCCUCAAAAUAAUUGGUUCACAUCAUCAAAAUAUUUCUUUUUUCUGGAGGAAUAUCAAAUCUUCCCUCCUUAUACAAUGUAUGCAUUGUUUUGUAUUCAUAUACAUAUAUGUAGUAAAGCAGUAUAGUAAUUUUUUUCAGGUGCAAAAAUUUGUUGGAUUACCUCUCUGUGGAUCAUAAAAAUGGUACUAAUUUAAUUGAUCCCUAAUGUUAAUAUAUUCCAAUAGGAUGAUCCCAUUAUAGCACAGUAGCAGUGCUGCACAUCAGAUCUACCUCCGUCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.06%
ME_num:
MEP:
33.13%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.71
Avg Expression:
1.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.5957468175048 | 0.0392659187208528 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.60988487632963 | 0.00502931760197747 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.3103067403049 | 0.00209961973299957 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.69480413890541 | 0.0376874557119368 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.66814491882418 | 0.00016427867379073 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.54260059008322 | 0.00342750550756283 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.65488544405301 | 0.000358356440806152 |