Chr:
Chr4
Start:
15515983
End:
15518533
Strand:
+
Ref_name:
LOC107280528
Sequence
(XR_001545021.2):
CGCCGCCACCUCGUGCCCCCUUCCACCGCACGCGCCUCUCUCACCAUCCACCGCACGCACCGCCGCCUCCUCCGCCAAAUCCACCACGCGCCGCCUCCUCCUCCUCUCCCACCGCGCGCAGCCCCCUCGGUCUCACCCACACCACCGCACGCCGCCGUCCACCCAAAUCGGUCGCCGCACCUCCACCAGCCGGCCGCCCACCCAAACCAUCCCCUCCUCCCCACCUCCGACUCGACCCAAUGCCUUCCCAUCUCCUCCGCCGACUCCCCAUCGCCUCCACCUCCGGUGCCUGCCUCCACCUCCUCUUCUGACAUUAAGGAAGUCCCCUUAUUCAGGUGCUUUCGUGAUGGAUUUGGAGGGGAACUUGUAGCCAUUAGUUGCUUAAAAGUCGAGGGUAACUAAUUGACCAGCAUUUGUUCUGUACUUUAACGAAUUUUACACCGAUUGCAACCAGAAUUUGUUUCGGGUGUUAGAAUUGGGAGAAUGACAAGGGAGGUAACCAUGAAUCUUAGAUCAACAAGUUUAGUGGUCCACUAUCGAUUUUUCUACAAUCAACCUACGUUGUUGACCAUCUACCCAGCAGGAGAUAUAAAAAACACAAUAGGUCAUAACCGGAAGGGCUACUGAAAUUGUUCUGCUAAAGGUGUAACUUGUCCCUGAAAUUGUCCAUUGAAGAUUUUUUGCUGAAAUUAUUUUUGAAUGAAGACCUGCUAAAGAUAUCACUUGUCCCAGAAACAGACCUAAUAAAGAUAUCACUUGUCCAUUGAAGUUAUCUCUGUAUUUAUAUUAUUUGGAAGAGAUGUCACUUACAGUUAAUGAAUGCUAAGAAUUAUUUGUACUCUUGUAUGGAUAUGCUCUAUGCAGAGGCAUGUAUAUAUUGCUCCUAGAUGCAACAUAAUUGUUACUCAUGAAUUUGUUAUUUCUGAAACUGUGGUAUGGAACCCUACAGUGCAAUAUUUUCUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.59%
ME_num:
MEP:
3.86%
HE_num:
HEP:
71.34%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.58
Avg Expression:
28.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 8.4558507895265 | 4.15789592081436e-09 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 8.76563355080564 | 7.73793190455768e-10 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.25054747826377 | 0.000327126434269452 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.25062974263382 | 0.000341130623542313 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.25073261576827 | 0.000328769687799228 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.14164280561985 | 9.37541483983202e-11 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.25083451495587 | 6.51976506215565e-06 |