Chr:
Chr4
Start:
33078818
End:
33086848
Strand:
-
Ref_name:
LOC107280524
Sequence
(XR_001545005.2):
CCCCUGCUGAGGCGCCGACCACCGCCGCCCAAACCCUUCCCUCCCAAACCGAUCCCCUCCGCCGCCUGCGCCCCGCCCCUCUCGCCCGCACGAAAUCCCGGCCGGCGCCCGACCACCGCGGAAUCACGCGCGCGCGACUGCCGACGACCCAGGAGAGUCUCCCCCCGCGCUCGUCCGCGUCCGCGACACCGAGCACACGAUCAAGAUGAGAGGUCACUAGGGAAGGAAAAGUUGAAAAUCCAGAUAGGAACAUAUCAUAAUUCAUAAGGCUUCUUAAUAAUGUUAAAGAGAUAAGUGAUGUACCUCCUGUUCCCUCUCUGAUAUAUUGGCUUUGUUCUUCGUUGAAAUUGUCCUUUCUGAGGAUUUUUUUCUCCAAAGCCAUGUUUUAUUAUCCAUUAGUGAGAUGCUAAAUAUCUAUCAAUAUUCAACGCCGUUCUAAACUCCCUAGAAAUUAAUAAGAAAUAUAAAUGUUAGUAAGAUAUAUUCCCACCAAAUUGUACAAAAGGUGGAUACAGACAGAACAUUUCCUUGGGUGCUAUUCUAUUAAGAAACUGAAAUUGUGUGUAUCAAGUCAUCUUUGCAAAACUAUCCCAAGCUAACAUAAUCUGAAAGCAAGUUGUAUUUUAUCCCAGUUAAAUUCAUAUAAUUAUAUCGUAUACACGUUAGUUUUUUAUUCCAUGAGACAAGGUUGAAAAAUACAAGAAUUUGGACUCGUGGACUAAAACAAAGAAAUCCCUUUGAACACUUUCUAAGCUUAAUAAAAACUUUGGCUGGCGUAUGCCAGCUCAGCAAGUAUUUUGUUAACCAAUGAUUGUUCAGAAGUAAAGUACUGUUAAUUAUCUGCCAUGUUAAUAGAAAUUGACCACUAUCUAAUCUACUAUUCAUGAUUAAUAAGUUUCUUCAUCAGCUAACCAUAAUAUCAUUUUCCUUUCAAUGCAGAAAGCGAUGCUCAGCUCAGAAAAGAAAGUAAAGGAUAUAGUGAAGCUUGUUCUGUUCCACUCUCUUUGUACCUACCACUUCAAAAGCUUCUGUGUCAGCUCCAAUAGUGGAAGCCCAUUGACAUUGAACCUAUCACUUUGAUCCAGAAGCGUCACCAACCGAUGCAAUUAAAACCAGCCGGUACAAAGGCAUUUAUGUGACUCAGGAGAGUUCAUUGCCAGCUUGCCACAGUACAAAAUGAUUUUCGUGAGCACAUUCAUCAAUAGUGUAGAGAAGGGAUCAGUGAUGACAGAAGAAUACUAGUUGUUGGCACAUAUAGUACUACCGCUACUACAAUGGUUUACUUAGUGAUUAAUUACAUGGAUAUUGGAUAACUAACCUGAGAGUGGAUAGGACCUGCAGCAGUGGCCCAUAAGGAGGGCGUGCAUCAGUGGCAUCGACCACCGUCAGCUUAGAACGUUUGUGAGGUUUACCCACCUAAAUGAUUGGCACUUAUCACAUGUAUUAAUGGUUUGAUGCAUGAAUCAAGGGACAGCGGAUUGAAAGUACGGACAACUUGUUUGUGCUACUUACGUUGGAAGUGUACACCUCAAGCUAGUGUGACAUCGGUUCAUCAAUCCAUCUGUCGGGCUGUCUUGCGCACCACCAGGAGGAAAGAUUGCCAGCUAUGUUCCUAAAGCGACACAUAUAUUUGCUGCACGAUAAAUUUAGCGUCAUAUACCAGUCAGUGGCAUCAAUCUUAAUUCACAGUCCACAAGCCAACAGAUCUGUGAAAUGGAUCGGUCAGUGUCUCAGUGGCUGAUUACUUCAACGAUUAGCUCCACGCAGAUGCAGUCAAACGCUAAUUUGACAAUCUGCUGUAACGGUCGUUGGACAGAUCGCAGAGGUGACAAGUGGGGUUCCAUGCAGCGCAGUGCAGUACCACGGACAAGCCUUUUCUCUGAAGCAAAAUAUGAAGAAAAGUAACCCGUUGAGAAGAGAAGAAGAAUUUACUUCGAGUAAAAGGCUGAGCUGAACAUCCAGGUCCAGUCCAUGCAGGCUGGCCCGGUGCCAAUCUGCUGGACCACCAGCCCAUAGCCAAACCAAGCUAAGUAGACUUUUGGGUCCACCGGUCCAUCCCGCCGCAUCCGUGGAGUCACGUGUCCUCAUCGCUCGCCCCAUGCUGCAAUUGCGGCCCUGUCCCGGGUUUGAUGGGCCAAUCGCGCGGGCGCGCAUGGGCAAAACAGCCUCGCCGACCGCCGCGUCGCGCGUUGCGGGUGGGCUCCGUGCCCGUGCCGCCGCGACGACGAUCUCCUCGGUGGCGGCGUCUCCGCCUGUCGUACGCGUGAUGCCGCGCGCGCCGAGCCGAACAAGUAAACAACCGAUCGGUCCGCAUCACCCGCCGUCGAUCGGUGAGACGGUGAGUACGUAAUCCAAGUGAUGCACGGGCCGUAUGCACGCGUGCUGUGCCGGUCAUAUGUAUACGCCCCAGAAAAAUGAUUUCAUCCGUAAAGCGGCGGCGGCGGCGGCGGCUUGGAACGACACACGUCCCAUUCUUGCGUCAUUACAAUCGGUGUGUUGAUUAUGCCGUCGGCUUCACAGCUCACACAAGUCGCCCAUGUACGCCUCAGGGUCAUCUCACGCGCACUUGUGCCCGUGCUAAAGACAAGUUCUUCGAUCGUCGGUGGUGCCAAAGUCUAAGCUUGCACGACGGUUCUACAGGAGAUUAGUGCCGCCCGGCCGGCCUGGAACCACAAUUUCAAGGGGGCUUGCUCGGACAAUUAUACUUGGCAUUAUUGAUUAUGGCUCAAGAGUACUAUACAUCAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.06%
ME_num:
MEP:
58.33%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.71
Avg Expression:
3.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.00841051220368 | 5.93680295219247e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.66159246577131 | 9.212307240066e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.19298693101053 | 7.54979567851207e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.98812789972589 | 2.54402947822496e-07 |
| 5 | Azucena // root // control--/--Azucena // root // Al | 1.25603351330015 | 0.0225054873893355 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.75855325927656 | 6.51648826651095e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.3727550732317 | 0.000455334701079849 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.05558543718696 | 4.91208689228247e-10 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.10759436878157 | 0.0194390827372631 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.69627264589524 | 4.79727358095762e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.39275445637127 | 3.62903762245568e-15 |