Chr:
Chr1
Start:
25547856
End:
25548893
Strand:
-
Ref_name:
LOC107280517
Sequence
(XR_001544978.2):
UAUAUUCGUUCAGAAAUCCCCUCUUCUCCCAGAUCCGCCUCUCGCUCCCCCAACUCCAGUUGUCGCAGGAGACGCGCCGCUCCCUCCACCGAUCCAUCACCGUUGCCCCUGCUUCACCGAGGCCUGCAGGGCUUACCCACCGCCAACUCUACUCCACCCCCUAACUCCCCUGCCGCCGUCCUUCUUCUUCCUUAACUUCGGCGCAGGGCCGCCGCCACGUCGCACCGGGGUAACUUCGAGUGCUCCCAAGUGCUUAUUACGCCAUGGACUUGAAUACCGCAAAGAGUAUGAUGCUGGACGACAGCAACAUCAGCCCAAGAAAGAAGACAUUCACGACACGUAAGAACACCAUGCUGAGCAUAAGCAGAAACAUCAAUCCAGCAGACCAAGAAAUGCUCAAAACAUACAAGAGGAGAAGAGUGAACAGGGCUUCCAUCCCUCAGUUGUUAGACGACACUGGUGGAGAAACCAUCUUUGGUCGGUCGACCAGAUUUCACAAUAGUCCCGGUUAUAUUAAAAACCGCGACUAAAAAUAUCUUUAGUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.88%
ME_num:
MEP:
32.32%
HE_num:
HEP:
62.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.68
Avg Expression:
32.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.38316349061406 | 0.000180522826012988 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.59382028112945 | 0.00495315979824894 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.27796150084561 | 0.000211591594230564 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.95410225295113 | 7.44327131869434e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.4319464071398 | 2.21113112652756e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.56974070389202 | 4.94267264725909e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.10799323380043 | 0.00239511068866008 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.61702531340831 | 0.038621546314196 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.35671692102369 | 5.35596385739321e-05 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.50025454170167 | 0.0388133527894207 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.97259923858345 | 0.0052091542256524 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.26035085178773 | 9.51697845581898e-10 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.61499075006148 | 2.33402394076278e-06 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.93801134733321 | 0.00320900102111086 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.30228745990595 | 0.0317799233008644 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.67952812400031 | 0.00359596160510251 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.40939732990769 | 0.049267495249427 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.06371313328327 | 0.00513199916368077 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.06361320954865 | 0.00521480592153978 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.06347103633229 | 0.00516229485637109 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.51011747939757 | 4.05608807807711e-11 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.64726939093855 | 2.14616757431049e-14 |