Chr:
Chr4
Start:
22824943
End:
22827970
Strand:
-
Ref_name:
LOC107280497
Sequence
(XR_003241897.1):
ACUCCACACUACAUGAUUGAGUAAAUACGAAAUGUGGAACAGUCAGGCAUUCAAGCUCAACCGGCUUGGAUAUACAGUAACAGCAACAUAUUCUUAAGUUUGUUUUAACAGUAUUGACUUUUCCCUUGAUCCCAUCUGCUUAUGAAAAGAGCAUUUAUUCAUGCCACAAAUGGUACAAUGCCACGUUGUCAUCUUCUCCUGUAAGAGCAUCCCCAGCAGCUCAUCCAUAUUUAAUCCUCUAAAUACCCAUAUGGAUAGUCAUCAAAAAAAGAUUCCUCAUUCAUAUCCAUUCCCACUCCAACAAAUCAUCCAUAUUACGUCAUUCAUAUCCCACCCUCCUAUAUUUUAAUAAUAUCUUCCAACUAACCUUACUUUUACUUUUGUAUUUUUAAGGGACAUAUUUUGAACUACUAAAUUUUAACAGUGUUAUUUAUCACGAUAAUAUUUCGAAAUGAGUAUAUUUUAACGGAUACAUUUUUAAUGGAUAGUUUUUUAAUUGAUAUAUUUGAAUUGAGUGAAGCAUUUUUUUUGGAUAUAUUCGUAGCAACAUCCAAAAAAAAAUGAACACAACAAAAAUAAACAUCUGUAUAUUUCCCUUUCUCUACUCAGGCUGCACAGUAGUGAACAUACUACUAGAAUUUUUUUAAAAAAUAAUACGAUUUUAAUAGAAAAUCGCAAAAAUAUAGGUCGGUUCGACGAAAUCGUAAAUUUAGCACCCUGUCGAACAACCGUGUCUCGAUAGAGGUACUUAUCGAACUAUGGCAGUUCGACAUGUACCUGUCGAACUGCCAUAGUUCGAUAGGGUAGUUGGUCCAAGGGAAAAAAUAAAAAAAGGACAGUAACAGUGCCUGGCAGGACAUAUCGAACAAGCAAACUUCGAUAGGGUGGCAUGUCGAACUUGGUCUCAGCUACAGUGUGCUACAGUGUUUUUCCUCUUUUUAAAAAUUAUUUUAUCAUCUGUCGAACUGCCGGCACCCUGUCGAACUGCGGUUGUUCGAUAGGUACCCUGUCGAACCACGGAUAUUCGAUAGAGUGCCAAACUUGCGAUUUCGUCUAACCGACCUAUAUUUUUGAGAUUUUCCUUUAAAAUCGUAUUAUUUCCAAAAAAAAUCCCAUACUACUACUACUCUUUCUGCAGAGGCAGCAGGCGAGGGGCAGCAGCGGGCGUGCGGUGGAGGGGCAGCGGCGGCCGGGCGGACGGGCGAGGGGUGGCGGCGGGCGUGUGGCCGGGAGGGCGAAGGGCAGCGGGCGUGCGGCGGAGGGCGGCGGCGGCCGGGCGGGCGGAGGGCGGCGGUGGGUGUGUGGCCGAGGGUCGGCGCGCGGCCAGGCCGACGGGCGAGGGGCGGCGGCGGACGACCGGACGAGGGCGCAGAUGGGCGGGGAGGAGGCAGACGGGGGGAGGAGAAGCUCGAGGGCGCUGCUGCGGGUGUCCGACGGCGGGAGCGCCGCAGUGGAUCAGGCGACGGCAGGAGGACAACCUGGGCGCGGGUGGCUGACGGCGGGAGCUCGUGCUAUGGCGAAACCUCCAGAUCUGGAUGGAGUAGCUGCUGGUCAUGCUCUAAGGCCAUUCGUAAUACGCUGAUGUGCCAUUCAGCCCGGAGAGCCCAGCUCGGAGAUUCUACUCCACGACUGUGUUUUUCAUUGCUCCAUGAGGAACGCGGAACCAAUUAUUGCUACAGGUACCUCGCCAGGAUUUGCAUGUUUGGACCCACCACUUUCAUGCCCCGCGCCACAGGGAAGGGAGAGGGAGAACGGGAAGAAAGCAUCCGACCGAAGGAGGCCGCAUCGACUGCCACCGAAGAGCUCAACAGGGACGGUAGCCUCCCGCUCCGUGCCGCCGCCAGGGAGCUUGUCGACCCUCCCUCCAGUUUGCACCGCCAAUCUCCAUCUUCAUCGCUCGAUCCGCCCAUGGCCCACCAAUGGCGGCGAGAUGCAGGGAUUGGUAGGCAAAAUCAGAGAAGAGAAGGGAGAGCCGCAGCCCUCGACGGAGCUCGCCUCGACAGCGGCGCUUCAUCCCUUGUCAGCAUGAGCCACCGACGGAUCCACCGGAUUGGAGACCGAGGGGGGGGGGGGCGUGGGGCGAAGCUCGCGGCGGCGUAGGCCUGAGCCGCUGUGGGGACCUCGCCAGCCUCAAUCCGUGCUCGCCGCUGAGGCCCUCCUCGAUCCACGCCGCCAGAAGCUCGAGGUGGGAAAUGCCGCCGUCGCUAAGCUCGAUAUCCAGCCGUUUCCUUGUCCUGUCGUUCGAGCUUGACGGGAAAGGCGACGACGGGACCGGAGAAGAGAGAGGCUGGUGCGGCGAGAGGAGAGGAGCGACGAAGAGGGAGAGGAAGACAUGAGGGAGGAGAGGGAGGCGACGGAGAGCGAGAGGAGCUUGAGGUCGAGGCCGCGCCACCGAGGUCGAUCCGGAGCCGGCGGGGGAGGCGACGGAGAGGGAGAGGACCUCCCGAGAUUAGCAGCUCGGUGCCACCACCGUUCCGCCGCCACGCCACCGUCGUCCACGGCUUCCGCCCCUCGCGGACCUCGCACGUCGCCCGCUGCCGUGCCACCGACUCCGCUGAACUCGCCGACCUCACCCGUCCCUCGCUCCCACUCCGCUGACCCCGCCGCUGCUUCGGGGGAGGAGAGAGGGGUGGAUCUGGCGAGCACCGACGCCUUCCUUCGCCUGCUGACUCAGUCUGCUAGUGGGGAAUGGAUUAGAGGAGAGAGAGAGAGGGGGGGAGUUAAGAAGUAAAAAAGAUAGUACUAGUGCACCCAUCUAUUAUCUAUCUAUCUAUCUUCUAUCUUCUAUCUAUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.5%
ME_num:
MEP:
66.46%
HE_num:
HEP:
26.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.59
Avg Expression:
6.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.58012621408053 | 4.36342676884933e-12 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.35685591769087 | 0.000347622151992398 |