Chr:
Chr1
Start:
30960477
End:
30962497
Strand:
-
Ref_name:
LOC107280496
Sequence
(XR_001544900.2):
CAGUUCUUCAGCCUGGGUCGGUACCAAAUCUGAACCAUUGAGGGGCAUGGAUCGAACGGCUAACAGCAAUCAGUACCUCCAGGUACCAUUCAGUUUGUAGGUGGUACCGGCCAAAGGAGAUAGAGGUGGAAGGGUAAAACUGUAUUUUUGCGUUGGAUAUGAGGUUGAAACGAUCGGAGCCGGUGAACCUCUUUGUUCGGAUUAGGCGGCCGGUGACGGCGGCGGCAUGUGAGACGGCCAGCGGCAGUGCGUGUGGAUCCCUAGAUGCGGCAACUAGCGUGAAGUAGAGCACACAUGGAAGGGCGUGGAGCUGAACGAGGAAGCUAGCUACCAAGCGAGCUGUUCAGUGGCUGGAGGAAACCCUCGACGGCAACACACAGUGGUGGUACCAAGGCCGGAGUGGUUGUGUUGCCGGUCCGGUGGGUGACUCCGACUAAUAUGCUUCUGCCGCCGGCGGCAGUGCCAGAGGAGGAGGAGGCAACAACGGGGGAGUAGGCGCCGGCGGAGGAGGAAGGGGACGCGGCGGUGGCAGUGAAGGAGGAGGACGUGGCGGCUGAGGAGUUGCCGCUGGAGGGCAUGGAAGGGGAAAGGAUUACGGCACACACGCGUGUGGGCUGCGACUAGAUGGCAAGCGAGCGCACCUACAUUUUCUCCCGAUCGUACGCUUCCGAAUUGAACGGUCCGAUCUUUUUAGGUACCUACAGAUAUCAGUACUGGGCGGUACCUAUUACUGGACUAUAAAAAUUCUCUAACAAAUAUAUGAUUUUAUUAAAGUACUUUGACUAAGCUAUACAUGUAGUCACCAUAUUUGAAAGACAAAUAUUUUAAAAAUGAUUCAUAAUUAAAGAUUCUAAAGUUUGACCUCACCCUUGUCUAAAAUGAUAAGUGUUAUCAGUCCGGAGGGAGUAUACAUCACACAAGAGAAGAAUUAUAGUACGCAGUGUGGCGAGAAAGUUUUUCUUCCAUCUCAUCAAUUAAGGAGGUAUAGAAGGUAAACUAUUUAAACUCCGUCCUCUAACCACUCCUGAUCUAAUGCAUGCCCGUGUCCUCGAGCCUCAGCUAUAGCGAUGCCACGGCCACCACCAUCCUGUCGCCCAUCCUUUUCCCCUGCAGAUCUCCCUAGCCAUCCUUUCAAGCUCGGAAAAAACAUCAUCUUCCCCUUCCUCUAACCCCCACCCUAAAAACCCCAUAAUCCGUACAUCCGUUGCUGGAAUUCGGGUGUCCUUCACGGUGCGGAAGAUGGAAGGGGUUGUCAAGGAGCUCGCGGUCGUCGGUCGUCGCCGACAAGCCCUGGCUGCCACCACCCCUGGCUCUCCUAUCUUCUUGUCUACCCCAUUCUAGAGGUUAAAGGCGACUGAGAGCACAUGAAAUUUGGCAAUUUCCAUUAGCAAUUUUCAAGCACGCAUUCGUUGGUGUUCCGAUAUUGGCAUAGGGCUGGUAGCAACACAGGAGAGGAGACAAGGAGAGGAGAAAGCGCUUCGUGUUGGUGACCUAACACAUGACAUGAGUCGCUUAGCGAGCUGGACAGUGGUACGCGGGCAGUGCAGCACUACCUGGCUGUACCCCCACCACUCAUGAAUGCCCCUGCUUUUGUAGUUCUGUGUCUCCCACCCUCCAGUUGCCAUUAGGUGUGACCUUGUGUAGGUAGCCUUUCUUCUAGCAGCAAGCAAGAAUGUAUUCCAAACGAUAUCACGGUCUAACAUAGGCCAGGUAAAGCUAAGCAGUGGAUCACUGUUUCUGCUAGACUGCUACUUAUCAUCGCAAACCGAGGUUCGGUCUGUACUCUGAAUUGCAAACGGGAGAUCAUCUACAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.12%
ME_num:
MEP:
52.44%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
2.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.34503892410463 | 0.0311522628576532 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.8050685523379 | 0.00582004287046752 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.42724827579687 | 0.0357638248542881 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.49586876560067 | 0.0168659230445409 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.93299640422495 | 6.104176357625e-08 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.0052926230751 | 0.0494548061821579 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.65025245463539 | 0.0144052275111196 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.3271289539088 | 0.0181691958485901 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.41019111970375 | 0.0193509782326245 |
| 10 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.18006975323579 | 0.0117713793804352 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.46824468955084 | 0.00290486149107041 |