RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280494

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

21391533

End:

21393041

Strand:

-

Ref_name:

LOC107280494

Sequence
(XR_001544877.2):

CUCUCCCUCUCCUUCCCUCCCUCUUCCUCUGUGUGCGUCUGCGGAGUGGUGGAGUGGACCUAUGCCUUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUGGUUCUAUGUGUGCAGCUGACCCAGCUGUUCCUCUGAGAAGCGGUGGAGCUAUGCCUUCUUAUAGAGGCGGCAACUUAAAAGAGUUAAGGUCAGUUCCACUUCAGCAUCCCCACCACUCCAAACCAUUACUUUGAAGCACAUGGUCAUGGAUGCAUCUUGCUUGUCAUCUUAUCAAAAAGAUCAUAAUCUGGAAGGCUCUGAACUGAAGUAGUUAGUUACAAAGGUACGUUACUUAGCCUAGACUAGCUGUGUGCAUCACAAAAGCGUGAAGGUGAAGAUGAGUCGAUGAGAUGGAAGUUGUGAUUAACGAAAGCAAACCACUUGCACGAGGCUCUGAUUGAAAAUCUGAUCUGUAUUAGGCGGUGCAGUGACAUGCAUACGCUACUAAUCCGUUUCGCUCCCUUUGUGGAUAGGACUGACAUUGCAGCUAGUGGCUGUGCGCGCGUACGUGGGGAUCACGUGCAUUUGCAUUAUAAAAGGCAUUGAGAUCUGGCACGGAAGGAGCGGUCGUUUUCCACGUUGCCGCGUGCUACACUGAUUGGAGCUCGUGAUUAAUCUGAGACUUGAUACGAUUGUCUGGAUUAAUGGGUUUACGUUACUUGAACUGGAUUAUUCUAUAGUCUAUAUGCAACGAGAGAGGUGGUUUGUGUGUUCACUCAAAUUAAUGAGUCAGCUCAUGUGAACUUGCUUUUCACAUUAACAAGCGACCCGACGUUGAGAACUGCGUUUUAUUUCACAUCAGUGUGCUAA

Sequence
(XR_003241422.1):

CUCUCCCUCUCCUUCCCUCCCUCUUCCUCUGUGUGCGUCUGCGGAGUGGUGGAGUGGACCUAUGCCUUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUGGUUCUAUGUGUGCAGCUGACCCAGCUGUUCCUCUGAGAAGCGGUGGAGCUAUGCCUUCUUAUAGAGGCGGCAACUUAAAAGAGUUAAGGUCAGUUCCACUUCAGCAUCCCCACCACUCCAAACCAUUACUUUGAAGCACAUGGUCAUGGAUGCAUCUUGCUUGUCAUCUUAUCAAAAAGAUCAUAAUCUGGAAGGCUCUGAACUGAAGUAGUUAGUUACAAAGGACUGACAUUGCAGCUAGUGGCUGUGCGCGCGUACGUGGGGAUCACGUGCAUUUGCAUUAUAAAAGGCAUUGAGAUCUGGCACGGAAGGAGCGGUCGUUUUCCACGUUGCCGCGUGCUACACUGAUUGGAGCUCGUGAUUAAUCUGAGACUUGAUACGAUUGUCUGGAUUAAUGGGUUUACGUUACUUGAACUGGAUUAUUCUAUAGUCUAUAUGCAACGAGAGAGGUGGUUUGUGUGUUCACUCAAAUUAAUGAGUCAGCUCAUGUGAACUUGCUUUUCACAUUAACAAGCGACCCGACGUUGAGAACUGCGUUUUAUUUCACAUCAGUGUGCUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

195

LEP:

39.63%

ME_num:

295

MEP:

59.96%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.75

Avg Expression:

3.41

Tip: OSA-LNC107280494 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.761859771332980.00745757350592759