Chr:
Chr3
Start:
4138652
End:
4139834
Strand:
-
Ref_name:
LOC107280476
Sequence
(XR_001544780.2):
UUUACUGAAAUAACAUGUUACCGAGAGAUUCUUGAAAGUUACAUACAAGUUACAUUAUAGUUACAGUGUAAUUACAUGCAAGUUACAGUGUAAUUACACUACGAUUGUACUGUAAUUACAUCUGACAAAUAUUAGGGGGAGAAAUUUGAUGACAAAUAUCUAGCAAAAUCGACUCGAAAAUUAGGCGAGGGCCAGCCCCAAAAUAAUGUUGCUGCUCCACUAGCUGCCACUUACUCGUAUUUUGUUUUUUUUUGUUUUUUUUUUGGUGGAUGUAACACCGAUCAAGCACUCCAAUUAAAGUAUGGCCUCGAACUUUGGCGUGUGAUUCGAGCUGGUCUAGGACGGUGAAAGCGUAACCUUUUCUUAUUGCAAGCUUGCAACACGACAGCACCAAUCUGCACUACACGAACUUAACAAACAAAACCCCAUGUAUGGACACCAUUGACGUGGAUCCGACCAAGUCAAAGGGUAUAAGAUGAAGACGCCAUGCCGUGCGCCGCCGUGCGUAAUAACGUCGGGGGUGGGGGAAGCGAAGAACGACCAGCUCUCGACCGCGCGCGUACGCCAGCUGGUGCACGCACUGAAUGUAUACAACGGCAAAGUACAGUAGCACAUAGUAACUCCAAGAGCAGAGCAUAUGCAGGGGACAUAUCAGCAACUAGCACGGACGAUAGAAUGUCCCUCGGUAUGGAGGGAUACGAUCUUCGCGAUGAACUCGAUCCUACAUGGGAUACGCCGCUUGGAUCGAGCAAUGAAUUGCAUGUGCACCCACCUCUAUCAGCCGUGUGCCCCUUUCCGAGUUGGUCGCCAAUCAGCAGAUCAAUGCGUACUCUACUCCUUUUUGUUGUUUGGGAGAUUUGGAAGGAGAGAAAUCAGCGUAUCUUCAAAUAUAAAGAGUGGUUCCUAGGCUGUUGGCUAAAAUGAAGGAAGAAGCACGAACUUGGGUUCUCGCUGAAGCAAAAAAAAAUAGCGAGUUUCUUUCUCCACACGUAUAGUCUGUAUAGUUUUUUUUUUCUUUCUUUCUUUAGAGGUUGUAUUUUUCUACCGCUAUAUUUAAUAAAAUAGUACAAUCUCGUACUGAUUGCAUUAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.5%
ME_num:
MEP:
80.89%
HE_num:
HEP:
12.4%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.69
Avg Expression:
7.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.02248782463578 | 0.031080953279821 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.15352385205633 | 0.000719803630327453 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.09299645497841 | 0.000212680100165755 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.45717935272352 | 7.96968515971793e-07 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.35943873854 | 2.19785639008844e-07 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.31986609073599 | 7.04438939947083e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.23270012675802 | 0.000349836042009448 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.69238901506053 | 0.00231312635116897 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.33086454885373 | 0.0189319940462486 |
| 10 | 9311 // leaf // control--/--9311 // leaf // salt | 3.46368912019366 | 6.19392166586461e-36 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.17805861742509 | 2.43205698287061e-22 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.11427373481212 | 7.40740731409184e-20 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.12222351628757 | 3.52279226143352e-07 |