Chr:
Chr3
Start:
20696092
End:
20697865
Strand:
+
Ref_name:
LOC107280453
Sequence
(XR_001544623.2):
CCGCACUCCUCCAUCGGGUGCCACCUCGCCUCUAUCCCUCCUCUCGUGUCUCUUCUGCUUCCCAUCCUCCGCUCGCUCUCCUCCGUGUGAUGGCGAGGAUGAAGUUCCGCAGUGGCUUUUAGUACCCUUGCCCUAGCCCAUGGCCAUGGGCAACCAUAUCGGCAGCGACGCAGGCGAGGCGGGCGCAAGUUCGAGGCGUCGAUCUGGUGGAGGAGAGCUCGGACUCCUCCAUUGAGAUGUGGACCGAACGAAGGGGACGCAUGGUCUUGGUGGAGGAGCGUACUCCUUCUCCACCUAGGGUGCCACUGCUAGAUUCACCAACGCCACCGCCAGGAGCUCCAAUCCCACCGCCGGCUGCUCCAGCCGAACCACCCACAGUGAAGAUCUAAGGAUAUUUAGGAUGAUGAGGAGCAAUCUGCCUCAUCGUGCAAAGAACCUGCUGCAAAGGACCUAUAAUAUGUACAGUUAGGCUAUAGCUAGUCUUGGAGAUGUGUAAUGUAAUGACUACUGAAAUGGGUUGGAUGGCAGCUGUUAUGUAGUUAGGGAAGUUGAUAUGGCUGGUGGAUGUUAACAUAGCAUCUUUUGGUUCUUUUGGUCAAGUAUGUGAUGACAUGCAAGUAGGUUUCUUGCCUCAAAUGGUCUGUUUUUGUUGUCCAUAUGACCAAGGUGAUGAUACUACCUCUAAUUAUGUAAGCGGAACCUUGUGCUUGUUUAGUGAAAGGAUGCAGCUGUCAAGUCUAGAAGCUCAUUUUUUGUUGUGAUGCAAACAUGUAUGUGAUGAAUUGUCAUACAUAAUUAGUUGCCAACUGUGGGCUAUUAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.23%
ME_num:
MEP:
8.74%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.98
Avg Expression:
8.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.8764176028672 | 0.00949830078980695 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.72108822793849 | 0.0107269627834393 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.97041232374797 | 4.13141755435089e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.54195707602663 | 0.00209618643069235 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.21448674598469 | 1.38435902414044e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.38156103843211 | 7.887752711582e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.78595041014384 | 0.000254771603915748 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.78418908969487 | 6.76401760375969e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.51878949697992 | 0.000240785423791881 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.71377873497213 | 5.02301321207824e-05 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.14398614970058 | 0.00638154444877523 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.44125685543813 | 1.53543401071481e-06 |