Chr:
Chr3
Start:
33447862
End:
33450761
Strand:
-
Ref_name:
LOC107280446
Sequence
(XR_001544586.2):
CGCAGCACCGUCGCCGUCACGACCACCAUCGCCGCCGCCGCCAACGUCAAGCAGAGCACGACAACGACGAUGGCUGGGACUUCCUCUUCAUCCAACGCGUCAACCGGUCACAUCCCUAAACCCUUUCCCUUAUUCUCUAUUGUUGUUCAAUCAUCCAUCGCAAAUAGAACCACCCGACUAGAUCUAAACCUAGGUGAUCCAAUAGACAACUCUAACAAUGGUAUCAGAGCCAUCCUAGCGUUUAUUUUUGGUUCGGGGAUAGACAUCCACAGAGAAGAAAGAAAUCCAAAGCAAAGAAAAGCAAACGAUCCAACGGAUCGAAAAGAUCGAAACCCUAACCCUAAUCUUACCUCGUCGCCGGCCACGGAGGGGGAGAGGGGCAAAGAGGCACCGCCGAGGAGCCACUCGACAGCCGCGCGCGCACCCGCGGGUGCACGCGCGCGCCGGCGAGGGGGCCCGCGGCGGCGCCACCAUCUCCGUCGUCGCCGGUCUCUCACUCUUCACUCGCGUGGAGGGGUGAGACGGUGGGGGGGAGAAGAGAAAAGAAUAGAGGGCGUGGCGGCGCGAGAGCGUCUGCCAUGGCGCGACGGCGCGAAGGCUGCCGGCGUCGGCGACGCCGCUCGGCACGGCGCACGCCCGCAAGAGAAAGGAGAGGGCGCCGCGGCACAACCGCUCGACGGCGGCGCACUCACCCUUGAGUGAGUGCGCGCAUCGGCGAAGGGGAGUGCGACGGCGCCGCCGUGUCGCCAUGCCGCCGCCGGCGCUGUGCUAGGGUUCCGGCGACGGCGUCGCCGCUCCGUGCACCCGCAAGAGAGAAGAGAAGGAGAAGCUAGGGUUUCGGCGGCCGGUCGGGGCGAGAGGGGGUUUUGAUCCCCGUUUUCGGCGCCCGACCGUCCGAUCAUAAACCCUAAGAUCGGACGGCCGGUGGCGGCCGGGCCAAAAAUGGCCCAAGAAGGGAGCGCGCGGCGGCGGUUUUCCCGGCCCAGGCCCAAGUUGCGGCCUGGGAAAGGGGAGGGGCCGCUCGCCCGCGCGCAAGGCGGCCGUGGGCCGACCGGCAAAGGCCGAAAAAAAAAAUUCAAUUUAGGUCCCUCGGGGCCGAAAGAAAAAGAAAAGAAGUUUAAUAAAAGUCCCUCGGCCGAAGGAAGCAUUUUCAAUAUGUUUAAUGAUUGUGUUUAUUUCUAAGCAAUUUGAACCAACGUGAAAAUUGUUUAGAUAACAGAUAAAUGUGAGAAAUGCUUCUGAACAUGUAUUUUGUAUAUUUUCAUGCAAAUUACAAUAGAAUUUUGAAUUGUUCUUACAUGUUUUACCUCUGUUUAAAUUUGAACCAACGGGAGAAUUUUUACAGAGAGUAAACAACAGAGUUUUGUUAUUGUUUAUAUGAAUUGUAUAUAGAUCUUCCGCUGCAAACAGAUGAAAUUGAUGAAAAUUAGUGUUUCUAAAAUUAAAUUUCGAACCAACGGGAGAUUUUAAUUUUAGGAACAUUAAUUAUGUGCUAUGAUGUUGUAAUUUUUCUGACCAACGUUGAUAAUUGCAAUGUUAUAGUUAUGGCUUUAUGUGUUAUGUCUAUUUUCUGCCCAACGGUGAUGUAGACUUAAUACAUAAUAAUUUUAAUGUUAAUUUUGUUCUCACAAUACAUGAUUAUCUCAGAUGGCUACUCCUUGAUGGGUUACAUUAAAGAUAUUCCGACCCUGAAAGGAGAUAACUACGAAGAAUGGAAAAGAGAACUCGACCUUGCUUUUAUCUUGGGAGAGGUGGACUGGGUGUUGACUACCCCAUGUCCUAUAGAACCUGCUGAAAUUUUCAGAGGUGAAAAAGAGUCAGAUGCUGAAUGGCAAAAGAGAGAGAGGGACAAUGCUUCCCUCAUCAUGUCGUAUGACAUUGAGCAUGCGAAAUGGUCUUCAGCCAACAAGAAUUGUUUGGCUGCGGUAAAGAACACGAUUGAGCCAACCAUAUUGGGCUCAAUCCCAGAGUAUGACACUGUCUCUAAGUACCUCGAAAGUAUAAAGAGCCGGUUUACUGGUUCUUCAAAGUUUUAUGCGACACAGCUGAUAAAGCAGCUUGUUACAGAGAGGUACCAUGGAGGUGGUGUAAAAGACCACAUUCUUAGGAUGAGCAACAUGGCUUCCAAAUUGAAGCAAAAAGAUUUGGGCAUCUCAGAUGACUUUCUGGUCCAUCUGGUUUUGUCCUCAUUGCCAAAGAACUUUGACAACCUUGUUGUCAACUACAAAAUAAGUACAGAGAAUUGGAAUAUUGAAGAGCUCAUCUCUAAUUGUGUGCAAGAGGAGGAAAGACACAAAGAGACCAAUGGUGACUCCAUUAACCUUGUCAAAGAUAACAAGGAAAAGAGCCACAGGUCACCCUCCUCAAAAGAAAAACAGCCUCAGCAUCUGCCUCAGAAGCAACAGUUUACAGUUGAGACAAGAUCAGUGUCUACAUUGCAAGAAGACAAGACAUUCCAAGAAAGAUCAUCCUGACUUCCUGACAGUGAUCAUGGCAAAGAAAGGGAUUCCGUUCAAUGAGGACUACGCAAAGAAGUGAAAGAUCCAUUAGAGUUGCCAAUAGAGUUGAAGCAAAAGUUGAGGCUGUUGGAGAUCUUCGCCUAGAACUCGCGAAUGGCUUCACACUUUUACUUCCAGACGUUUUUAUGUCCCUUCUUUGCAAAGAAACUUGAUAAUAAGUGUAUCCAAAUUGGAUUUUGAUAGAUAUGAUUGCCAUUUUGGAAAUGGCAAAUGUGAACUAUGGUAUAAUAAUGAAUGUAUUGGUCUUAUGUUGCAAGAUCAGCUUUAUUUGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.73%
ME_num:
MEP:
62.4%
HE_num:
HEP:
16.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.88
Avg Expression:
18.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.20656756166742 | 0.016780841559102 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.26788357264878 | 2.40903028035918e-05 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.38466733459247 | 2.40575247866381e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.21056099486649 | 1.86040044905246e-06 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.14271248886731 | 0.000144005188003418 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.53023453353391 | 1.34063416727161e-11 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.28158415443037 | 4.48765680903328e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.14100978177701 | 0.000920188278536995 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.13440162246927 | 0.00814540147871729 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.02471297414683 | 0.000890735527121806 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.148188837086 | 1.51836011517445e-06 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.26970100056538 | 7.49434757229884e-19 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.86576435376532 | 4.16227710288208e-05 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.17105749599004 | 0.00273689698522722 |