RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280435

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

4187677

End:

4188578

Strand:

-

Ref_name:

LOC107280435

Sequence
(XR_001544563.1):

GUCCCUGUGAAAGAUUCAUCAUCAUCAUCAGCAGCAGCAACAACUCAGUCAGAGCUGGGAAAGUUGGCAAGGCAAGUCAAAUUUGGAGACAUGUAAAAAUUGACAAGAAAGGGACAAGAACUUUCGCGGAUCAUGGAGACAAGGGAAAGAUAUUUACUUGCGUGCACAGUUAUGAUCCAUUUAGUCACGAAAUAUUCUGAUGCUUUUUUUUUUCUAAAGGGGCAAAAAAUUCUGAUGUGAUCAUGAAAAGGGGAGGCUCUGCAUUGAAGUACUCUGAAGAUUCCGGUGGGCGCUUUGGAUUUAAAGGACCAUGAGGAGCAAACGGAGCUGAAGCCAAAAAAAGGUGAGAUUUGAAGUCAACUCGGCGAGGUGCUAGCUUAAAAGCUUACUCCCAAGAAAAUGGAGUGCUUUGCUUGAUUCUUCUUACUUGGGUGGAUCUUGGUGCUGAUGAGCUCGAGCACGACAUUCCGGCCGACCAUG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

64

LEP:

13.01%

ME_num:

382

MEP:

77.64%

HE_num:

45

HEP:

9.15%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.67

Avg Expression:

4.18

Tip: OSA-LNC107280435 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.092686880304990.0342574869156316