Chr:
Chr3
Start:
12686465
End:
12688142
Strand:
-
Ref_name:
LOC107280386
Sequence
(XR_001544406.2):
CAAUGAGUGCACCAGCCACCUCUCUCUCUCUCACUCCCCCACUCCACUCUUCCUUAUUUCCCAAGCCAAAGCACCAGAAGCAACAGCACAUCCCCACAUCGCGUUCCAAGUCCAAGAAAACACACCCCACGCACAGAAUGCCUAGAGCUCGGCCAUCUUCCCCGGCUUCGGCGAAUUAGCCAUCGUCGCCGUGCAUCCCCGGACCAAUCUGUCGAGCAUGUGGUGGGCGUCACCGUCCUCGCCGCCGGCCACCCGAACCACCGACGCCGCUCCGGCCGCCGUUCCUCACCACCGAAGCAACACCAAGCUCCGUUCGCGCCUUGAGUCGACCCGGCGACGUCGACGCCGGAGUUUUGCCGCCGUUGGCCAUCAACCACCGUCUCCGCCGCUCCCUGGACCUCGCUGCCUCCGUUUCUCUGCUUGAGGAAGAAUACGUCGAAGAAGAAGAGGGUGAGUUUGUUGACGACCAGGCUCAGGAGUUUGCAGACGAAGGCAAGU
Sequence
(XR_003241271.1):
CAAGGAACACAAUGAGUGCACCAGCCACCUCUCUCUCUCUCACUCCCCCACUCCACUCUUCCUUAUUUCCCAAGCCAAAGCACCAGAAGCAACAGCACAUCCCCACAUCGCGUUCCAAGUCCAAGAAAACACACCCCACGCACAGAAUGCCUAGAGCUCGGCCAUCUUCCCCGGCUUCGGCGAAUUAGCCAUCGUCGCCGUGCAUCCCCGGACCAAUCUGUCGAGCAUGUGGUGGGCGUCACCGUCCUCGCCGCCGGCCACCCGAACCACCGACGCCGCUCCGGCCGCCGUUCCUCACCACCGAAGCAACACCAAGCUCCGUUACAGUUCGCGCCUUGAGUCGACCCGGCGACGUCGACGCCGGAGUUUUGCCGCCGUUGGCCAUCAACCACCGUCUCCGCCGCUCCCUGGACCUCGCUGCCUCCGUUUCUCUGCUUGAGGAAGAAUACGUCGAAGAAGAAGAGGGUGAGUUUGUUGACGACCAGGCUCAGGAGUUUGCAGACGAAGGCAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.07%
ME_num:
MEP:
17.48%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.93
Avg Expression:
4.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.80976781079116 | 0.000184533003457504 |
| 2 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.24256582378565 | 1.68525945259765e-07 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.31380570047484 | 0.0193682554077334 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.73705641553969 | 0.00671992510769109 |