Chr:
Chr1
Start:
404877
End:
405848
Strand:
+
Ref_name:
LOC107280385
Sequence
(XR_001544407.1):
GGAUGAGGGUGCGGGCGUGCGGCGCUGUUCACCGGAAUGCGUCGUGAGAACUGCCGCGCGCUGGCCGCGAAUCAAUCCAUGAGAAGGGAUGUGGAUACGGAUAUGGGCUUUUACUUCUGGACGAAAUUGCCCCUUGCUAAUGAUGGAGUAACUCGUAGAAGCAGCCAGCAGUUGUCGUGGUCGUGAGUGUCGUGCUGCCUGCAGUGCUGCACUGCAUCUGGAUCUCCAUGUUGCCAUCCAUGUCCUCCUCUCAUCCUGCUGCUGCUUUGCUGUUUUUUCCUGCUCCAUGUAUCUGUCUCUGUCCCUUUCUUCGUCUUGCCAUCCAUUUCAUGCCCUCGGUUUCGAUCUCAUCCUAAGUAAAUGGUGGCCCAUUGUUAGAGACCCACUUGUUUAAGCUCCAAUACAAAUCACGAGUAUAUAGGUGGGCUGGAAGGAACAACAACUAACAGGAGCAAGAUUUAGAAGAUUCUGAAUGAAUCAGUGAGUAAGAGGAUACAUUGGUUGGUAGGAAGAAGAAGAGAGGGAAGGAGAGAUCGACAAGGAGGCAAGCCCGCCUCCAGGUCGCCGUGCCGCCCUUUGGACAAUGAUCUGGUCUCUUGGGCUUGCUUGGACUUCUUGGAAAGUAGCUGAUUCAGCCCAUAUUGCAGCCCACAUGGCUCCUAACACCCAUGCCUUGCAUGAUCAAGAGUAAGAGUAAUGGUAGUAGUACAUUAUCUAAAAAAAAAAAGAGUAAUGGUAGUAGUAGCAAAUUAACUGUACCUAUCUCUGUCUGAGCAGAUCUAUCGAGCUGCCUUGCCUGGAAUUUUUUUUAGAAAUAAUAUUAUUUUAAUGGAAAAUUGCAAAAGUAGUAGCUGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
55.69%
ME_num:
MEP:
42.07%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.84
Avg Expression:
1.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.65727961534614 | 0.0258871716183911 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.08810868577389 | 0.0206655595497445 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.58409721002963 | 0.029132044289549 |