Chr:
Chr3
Start:
16563041
End:
16565536
Strand:
+
Ref_name:
LOC107280376
Sequence
(XR_001544398.2):
AAUUUCCUUGUCAAGUUCAAAAAGUCCUCAAAUUUAUCUCCUCAAGUUUCAUUUCCUUUGAAUCAUAUUUCAAAUAUAUUUAUAAAUUGCAAAAGGCUCCUAUUUAGUUUGGGCCGAAAUCCCUUCAUUCGGCCCAAUUGGCACAAGUCUAUGUUGCCUCCCUCCCCUUCUCUUCCUGUGAGCCGCCGCCGCCACCGCCCCCGCUGAAACCACAGGCGCCGCCGUCGCCCAGCCAAUCCGCCGCCGCCACCUCGCCCAGCCAAUCCGCUGCCGCCACCUCGCCCAGUCAAUCCACCGCCGCCACCUUGCCGCGCCGCCUCCCCACCUCCAAAUCGACGCCGAGUCGUGCCGUCGUCGACCAUCUCUCCCUCCACCGCCUUUGCCGGCCUAUAAAACCCGGCGCACCCUUCCCAUUUUCCCCGAUCCAUCCGAGCUUCUCAAAGCUCGCUCUCUCUCUCUCUCUCCAAACCUCCAUCGCCGGCCGUCGUUUCCCUUUGUUCCCCAUCGCCGGCCGCUGUCUUUUCCCUUCCCGGCGCCUCCUCCGACCGCCGCCGCCGUCGAGCGCCGUCGGCCACCGGAGCACCCCUUCCCUCGCCGCCCUUCCUCUGUCUCUCUCUCCUCUGUGCCGAUACGAGGAAGAGGAAGAAGAAGAGAAGAAAAAGGGGGGAAGACUGACUUGCGGGCCCCACCUCUUAUAAAGCUUUAUUUGCCAUCUUUUACGUAUACGUACGUUAGACAAUACAGAAGAUUUUGUCGGCAUCAGAGCUGAUGUGGAUGCAGCCGACUACGCUGAAGCCUCUGAAAAUUUCAAGGCGCAAGGCAAGAAACAAUUAAAAUUUUGACCACAUGAAAUAAUCAACCCCAUAUUUACUUUAUGCCUAAGUUAAUCAUAUGAAUAACAUUUUGGUGGCUUAAAGUGAUAUUUAAUGUUUUUAAGCAUUGUUAUAUGAGAUUAUGGAAAGAUACAGUGGACAUCAUUUUAUGUGAUUUAUUAUUCAAAUAUCUUUACAAACUUAAAAAUCCGGUUAAAAUGGGCAUUUUUGUGUUGUAAUGAUGAAUGUUGAUGAAUGAUGAAGUUUGUGGUGUUGGUGUGGGGAGUUUGGAAAGUUUUGAAUGGUUUAACCGGAUUAUAAUUACCCCCUUAUACCAUGGGAAAUGACAUAGUUGCGUCCAUCCACACGACCAAGUAAUUGGACUUAGCCUAGUACAUUGUCCCACUUUAUGAAAGACUGUUGGGUGGCUCUAUGAGUGGUUUUGGGGUAAACAUGCAUAAGGAGUUAGGGGGCAGUGUUUCACAACAGUGGGAUUCAUGAAAGUGUGACGAUAUAGAUACCUUGCCUAGGCCUGGCAAGAGUUCGACCACUAUGAUGAACCAAGACACCACUGUGCAGUAACUAGUAGUAAGUGGGACUCUCGAACGGCUAUGGUGUUUUCAGCCUUGCAAAUUGUUCUCAUCGUGUGGGUAAAGCUGGACAGUCUCCGCAGAGGUGAAUUAAAUCAUUCGAAUGUGCCGUACUCCCGGUUCUGGAGUUGUGUCAUAAGGGUGAUUCCUACUCCUGACGUAUAAGUAGUUUUAAACAUAAAAUAUUAAUGAAAAUAAUGAGAUUUUGUUGUUGUGCUUACUUUCUCUUUAAUUCAAUACCUUAUGCUUAAGAUGAUGAUAUUUAAGCUUCCAUAAUAAUAUUCAUAUCAUGUUUAUAAGUGUCUUGCUGGGUACAUAAGUACUCACUCUUGCUUAAUCUAACAUAUAGAAGAACCGUUUUACGAAGAAGUUCCAGAAGGUAGCAAGGCCUACUUCAACGACGAGUUUUUCUAGGCUUAGUCUCCACUCAAGCUUAUACCUGUGAAGUUUAGUAGCUUUGGGUUUUUCUUUAUACUUUCAAAUAAGGUUGUAAUAGUUUGGAUCUUUAAAACCAUUAACAGUUGUAUAAUUAGUUUGUAUGACCAAAUUUGUAUAAUUAAUUGAAAGUUGUUAUGUAUAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.74%
ME_num:
MEP:
13.82%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.94
Avg Expression:
7.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.28699377772342 | 7.76888396002582e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.69954845736059 | 0.000238439210826227 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.69573486045336 | 0.000158504850943912 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.71156669132368 | 0.00335374936780168 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.63256762420466 | 3.18588476394018e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.29526860715034 | 5.25439334574647e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.90579185415155 | 4.02071027629274e-30 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 9.18626252871805 | 1.36367996246267e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.73303289233218 | 4.26941413841762e-98 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.9205887882262 | 0.000732675521821888 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.73058257332236 | 1.7026281198864e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.32531351337133 | 0.0137964800877356 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.28650267513461 | 6.67621786414191e-12 |