Chr:
Chr3
Start:
12757838
End:
12759054
Strand:
+
Ref_name:
LOC107280370
Sequence
(XR_001544389.2):
ACCUCCUCUUCUCGUCCACAUCCUUAGAGUCAUCGGGACCGAAUCGCCACCCGCCAGCCGCCGCCAGCCGGCCGCAUCCCCGUUGCAUCUUCCUUUGGCGGAAGCGGCACUCCAUCCAGUCUCGCCGAGCCUUCGGCCGAGGACUUCCAUCAGGUAGCUCUAGGAAUCCCCUCUUCCCCAACCCCCCGCUGCCCCCAUCCCCCGUCCCCUCCUCCAUAUCACCCUCCUUGAGUCAUCGUACUGGACUCCGACGAGCUUCCAUCGCCGCACAUGGAGGCCCUGCUGCCUACGGCGGCUGCGCGAAGCCUCCCGUGGCAAGAGUUGCCUCCGCGCACAGACGCCGGCGAGCUAUCGCGGGCCAGCAAACAAGUUAUACCGCCCCGUUCGCCAUUCUUGAGCUUCUUGAAGUGCAGUUCUUCAUCCGUGCUGUGAGCGGACGCCGGCGAGACGACACGAGCUGAGCCGAGGCAACAAUACGUUAAGGUCUUGAGAAGAGUGGUUUACACCAACGGAUCCAUGCAACAAUGCUAGCAGAAGCUGAGUAGCCCAUAGGCCAUGGCGGCGACGAAGACUGUUUUUUUUUUUUUUGUCAUGGAAGAACUAACACCCCUUUUCUAUUCUUUUUUAUAAAAAUUAAUGAUUAUAAUUAAGACCAAAAGAGCCAAUUUUUGGGAUGAGGAAAAUUGGUUCAAACUUCAAACCAAAUACCUCUUGCUUCUUUUUGUCUUUUUGGGAUGUAACUUCAUCUAAGAUUUCCGAUAUUUUUCCUCUGUCGAAUACUUUUAAUAGCAAGAAUGUAUAGAAAAGCUGAAUAAGAUACAAAAAUUUGGGGACACUAUGGACACACUGCAGAAAGUUGCAAACUUUGUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.32%
ME_num:
MEP:
36.38%
HE_num:
HEP:
31.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.74
Avg Expression:
10.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.25066027276975 | 0.000918493191663368 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.79851331532248 | 5.94129586690998e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.1497689043996 | 0.000970885312784092 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.40523322440535 | 9.48158018414848e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.40621262573822 | 0.000995174289207441 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.87403811245583 | 3.86937843929601e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.47921998655841 | 0.000226550505746683 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.23049843750898 | 0.000314837224953041 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.14822082052316 | 0.00437507092905505 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.29439675236103 | 0.000654462762193173 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.00092622683941 | 0.0383328625277805 |
| 12 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.88109271154349 | 0.0184463767641943 |
| 13 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.11871312414823 | 0.042578281961131 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.26416139281155 | 0.00570787703179365 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.38863829814888 | 7.7692588593773e-05 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.34064412108021 | 7.58144536347105e-05 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.07502172399866 | 0.000918035681789148 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.00685623528011 | 0.000356320422064435 |
| 19 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.67449801413933 | 0.0479847866003733 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.06442902897139 | 7.25952038088807e-05 |
| 21 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.67457666524444 | 0.0487280297924082 |
| 22 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.6746894300965 | 0.0480629845393712 |
| 23 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.88922991481564 | 2.45846772212568e-19 |
| 24 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.89781139642627 | 1.12030594314339e-16 |
| 25 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.31353273243887 | 5.77658228248279e-08 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.62620474672072 | 0.032043362830751 |
| 27 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -4.6305422057313 | 1.30562583186217e-61 |