Chr:
Chr3
Start:
34305088
End:
34310101
Strand:
+
Ref_name:
LOC107280356
Sequence
(XR_001544362.2):
UCUCUCUCUCUCUCGCUCUCCCACUCGCACCUGCGCCAGCGCCGCAUCCCCAAUCCCGCUCCCGCACGCGCUGACGCCGGAAACUGCUCCGCCAUCAGCGCUCCCCUCCCCAACAGCCUCGCCGAUCUGCCCCGCACGUCGUCAAGGGUGCCGGCUCGCCGCAGUCUACAUCGCCGCCCACUCCGUCGUCAUCGAAUCCGUCCUCGGGCAGGAAUCACGUCGCCGCCGAUGCCCUCUGCGCCGAUCUGUUCCUCACCGUCACCGAUCCCCGCUGCCAGCUCGCCCUCCACCGACCCCCCGCCGGAAGCCCUUCUGUCGCCAGGUCUCCGCCAAUGCAUUCCACACCGAGCUGCUCCUCGCCGCCACCGAUCCCUGCUGCCAGGUCGCUGCCGACGCCUUCCGCACCGAGCUGCUCCUCGCCGCGCCGCCACGACGACGACGAUAGACUCCUCAGCAAGUCGCUCCUGCCGACCACCUAGCUAGCUAGCUAACGUCUUGACGAUGUGUUUGUGGCUAGCUAGAGCUCUGAUGCGGCAGCUUGUAUGGUGUGGCUGGGAGACGACGACGCAGCGUGCGCGAGAGGAUGGGAGUCACGAGCUCCAGCCUUAAGGGAGGGGAAGGAGCAUAAAAAAAAAUUGAGGGAUGGAAAGAGAAAUAAAAAGUUAAAAACAGAGAGAAGACAAAAUAGAAAAAAAUUUGGAAGAUUGGAAGAGAGGUUCAGAAAAUUUAAUUCAGUGGCUCAUGACCGUUGUUCUAAAGGUCAUGAUCAUGUAGAUAUGCCUGCAGUUCGCUGCCGAGGUGCAGGAUAGCUAGGAAGGAGAUAACUGGAGCAGUACUUGUGUCAUAGACUGAUUGACAGUGCCGAUCGACGAGUUGCAUCGAGAACACUGGGCUUUUGGUCCCAUAGCUUCAAACAAAAAGACCGCUUUGUAGUUUCAAUCUGGAAAUCCAUUUUCGUUGGUCCCAUGCAGUGAUGAAAAUUGAGCUCCACACUGCGCCGGCAACCCCGGCGGGCAACCUCUGCACCGCCACCUCCCCUGUCGUCUGGUUUCCACCGCCGGUAAGAAAUUGCAGAACCCCACGUUUAAUUUAAUUAAAGAUCUUUUCUGUUCAGAGCUGCAGAUUAGGUGUUUAAUUUCUUCAUGGCACCCUUUGUGCAGAAGGAAUUGCUCAAAUCAGACACAAGUGAAGCUAUUUGAGGGAUCACUAGCUGUACCAAUUUCUUUCCAGUCACAUUGGUGAACAAAAUUGGUAUAGGUACUGCAACUGGAUCAGUCGCACAGAACUUUCUCCAAAUUGGAUUGGCCUCACUCCUGAUGACUACAUAAACAUCAUGGAAAAAAUUGUAUGCGAUAUGUGUUUGAUCCUAGGAAGUAUGUGAUGUGGAUUUGGGUGAUCUUACCGUCUUGUUGGCUUUUACAUGGCAUGAUUGACAGUGUGUAAAUAAAAUCAUUUAGUGCUCUGUAAAAAUAUAUGUUGCUUGUUGAUGUCUUAAUGGGCAUGGAUAACAUUGUCAUCUUACAUAAAUGCUAUGAUUUUUUUUUCA
Sequence
(XR_001544364.2):
CUCUCUCUCUCUCGCUCUCCCACUCGCACCUGCGCCAGCGCCGCAUCCCCAAUCCCGCUCCCGCACGCGCUGACGCCGGAAACUGCUCCGCCAUCAGCGCUCCCCUCCCCAACAGCCUCGCCGAUCUGCCCCGCACGUCGUCAAGGGUGCCGGCUCGCCGCAGUCUACAUCGCCGCCCACUCCGUCGUCAUCGAAUCCGUCCUCGGGCAGGAAUCACGUCGCCGCCGAUGCCCUCUGCGCCGAUCUGUUCCUCACCGUCACCGAUCCCCGCUGCCAGCUCGCCCUCCACCGACCCCCCGCCGGAAGCCCUUCUGUCGCCAGGUCUCCGCCAAUGCAUUCCACACCGAGCUGCUCCUCGCCGCCACCGAUCCCUGCUGCCAGGUCGCUGCCGACGCCUUCCGCACCGAGCUGCUCCUCGCCGCGCCGCCACGACGACGACGAUAGACUCCUCAGCAAGUCGCUCCUGCCGACCACCUAGCUAGCUAGCUAACGUCUUGACGAUGUGUUUGUGGCUAGCUAGAGCUCUGAUGCGGCAGCUUGUAUGGUGUGGCUGGGAGACGACGACGCAGCGUGCGCGAGAGGAUGGGAGUCACGAGCUCCAGCCUUAAGGGAGGGGAAGGAGCAUAAAAAAAAAUUGAGGGAUGGAAAGAGAAAUAAAAAGUUAAAAACAGAGAGAAGACAAAAUAGAAAAAAAUUUGGAAGAUUGGAAGAGAGGUUCAGAAAAUUUAAUUCAGUGGCUCAUGACCGUUGUUCUAAAGGUCAUGAUCAUGUAGAUAUGCCUGCAGUUCGCUGCCGAGGUGCAGGAUAGCUAGGAAGGAGAUAACUGGAGCAGUACUUGUGUCAUAGACUGAUUGACAGUGCCGAUCGACGAGAAAAUUGAGCUCCACACUGCGCCGGCAACCCCGGCGGGCAACCUCUGCACCGCCACCUCCCCUGUCGUCUGGUUUCCACCGCCGGUAAGAAAUUGCAGAACCCCACGUUUAAUUUAAUUAAAGAUCUUUUCUGUUCAGAGCUGCAGAUUAGGUGUUUAAUUUCUUCAUGGCACCCUUUGUGCAGAAGGAAUUGCUCAAAUCAGACACAAGUGAAGCUAUUUGAGGGAUCACUAGCUGUACCAAUUUCUUUCCAGUCACAUUGGUGAACAAAAUUGGUAUAGGUACUGCAACUGGAUCAGUCGCACAGAACUUUCUCCAAAUUGGAUUGGCCUCACUCCUGAUGACUACAUAAACAUCAUGGAAAAAAUUGUAUGCGAUAUGUGUUUGAUCCUAGGAAGUAUGUGAUGUGGAUUUGGGUGAUCUUACCGUCUUGUUGGCUUUUACAUGGCAUGAUUGACAGUGUGUAAAUAAAAUCAUUUAGUGCUCUGUAAAAAUAUAUGUUGCUUGUUGAUGUCUUAAUGGGCAUGGAUAACAUUGUCAUCUUACAUAAAUGCUAUGAUUUUUUUUUCA
Sequence
(XR_001544365.2):
CCCCUCUCUCUCUCUCUCUCGCUCUCCCACUCGCACCUGCGCCAGCGCCGCAUCCCCAAUCCCGCUCCCGCACGCGCUGACGCCGGAAACUGCUCCGCCAUCAGCGCUCCCCUCCCCAACAGCCUCGCCGAUCUGCCCCGCACGUCGUCAAGGGUGCCGGCUCGCCGCAGUCUACAUCGCCGCCCACUCCGUCGUCAUCGAAUCCGUCCUCGGGCAGGAAUCACGUCGCCGCCGAUGCCCUCUGCGCCGAUCUGUUCCUCACCGUCACCGAUCCCCGCUGCCAGCUCGCCCUCCACCGACCCCCCGCCGGAAGCCCUUCUGUCGCCAGGUCUCCGCCAAUGCAUUCCACACCGAGCUGCUCCUCGCCGCCACCGAUCCCUGCUGCCAGGUCGCUGCCGACGCCUUCCGCACCGAGCUGCUCCUCGCCGCGCCGCCACGACGACGACGAUAGACUCCUCAGCAAGUCGCUCCUGCCGACCACCUAGCUAGCUAGCUAACGUCUUGACGAUGUGUUUGUGGCUAGCUAGAGCUCUGAUGCGGCAGCUUGUAUGGUGUGGCUGGGAGACGACGACGCAGCGUGCGCGAGAGGAUGGGAGUCACGAGCUCCAGCCUUAAGGGAGGGGAAGGAGCAUAAAAAAAAAUUGAGGGAUGGAAAGAGAAAUAAAAAGUUAAAAACAGAGAGAAGACAAAAUAGAAAAAAAUUUGGAAGAUUGGAAGAGAGGUUCAGAAAAUUUAAUUCAGUGGCUCAUGACCGUUGUUCUAAAGGUCAUGAUCAUGUAGAUAUGCCUGCAGUUCGCUGCCGAGGUGCAGGAUAGCUAGGAAGGAGAUAACUGGAGCAGUACUUGUGUCAUAGACUGAUUGACAGUGCCGAUCGACGAGUUGCAUCGAGAACACUGGGCUUUUGGUCCCAUAGCUUCAAACAAAAAGACCGCUUUGUAGUUUCAAUCUGGAAAUCCAUUUUCGUUGGUCCCAUGCAGUGAUGAAAAUUGAGCUCCACACUGCGCCGGCAACCCCGGCGGGCAACCUCUGCACCGCCACCUCCCCUGUCGUCUGGUUUCCACCGCCGGUAAGAAAUUGCAGAACCCCACGUUUAAUUUAAUUAAAGAUCUUUUCUGUUCAGAGCUGCAGAUUAGGUGUUUAAUUUCUUCAUGGCACCCUUUGUGCAGAAGGAAUUGCUCAAAUCAGACACAAGUGAAGCUAUUUGAGGGAUCACUAGCUGUACCAAUUUCUUUCCAGUCACAUUGGUGAACAAAAUUGGUAUAGGGCGGCGUAUGAAGUUAGAUAUCAUAAUACUCCGAAGGAAGGAUGAGAUCCAAACACAACUGCAAGUUUGCAACUCCUGGUUCUUGUUCAAUAGAAUGAUCCUGAAUUUGUGCAUUGAUGAUCACAUUGGUGCUCAAGAACGAUUACAAGAUUUAAUCAACCUUGAUGCAAAAUGAUGCCUUUGUCAGAGGUCAGGGGUGAGCUCAGUUGGAAUGUGUCGUCUUGGUGUAUUUGAUUGAGUCUUAAUAAAGCUUCCAUUAUUUAAAAAGGUAUACACUAGUACCUGAAACUGUGCCUUUCACAUUUCCAUCUGAAGAAAAAUGCAAAUAAAAGGAGGAAAAGAAAACGUCUUUGGAGGUUCGGAGUUCCCUUGACCUCAAGGCCUGAUGUGAUUAAACACUAAAUAAAUUUCGAAACGGCCCAAUAAUUUGAGCCCAACGAAAAGCCAUUCCUGGAUGAGAUCCAACCACAACUGAACUCCAUGUUGUUGCUCAACAGAGUGACGGUGAUCAAUUGGUACUCAAUAUCGUGUUGGAGAAUAAAACUUGUGCAAAACUUUCACUAGCAAAUCCUGGAUUGUGAUUGUUUAAGUUUCUUUCUGUAGCGAAACUUGACUGCCAACCUCCAAAGUACUCCUUACUACUCUCAUCUGUUGAUUUUGAUUAAACUCUGAUGAAUAAAACUGUGCUAUCAGAAGGAA
Sequence
(XR_001544366.2):
CCCCUCUCUCUCUCUCUCUCGCUCUCCCACUCGCACCUGCGCCAGCGCCGCAUCCCCAAUCCCGCUCCCGCACGCGCUGACGCCGGAAACUGCUCCGCCAUCAGCGCUCCCCUCCCCAACAGCCUCGCCGAUCUGCCCCGCACGUCGUCAAGGGUGCCGGCUCGCCGCAGUCUACAUCGCCGCCCACUCCGUCGUCAUCGAAUCCGUCCUCGGGCAGGAAUCACGUCGCCGCCGAUGCCCUCUGCGCCGAUCUGUUCCUCACCGUCACCGAUCCCCGCUGCCAGCUCGCCCUCCACCGACCCCCCGCCGGAAGCCCUUCUGUCGCCAGGUCUCCGCCAAUGCAUUCCACACCGAGCUGCUCCUCGCCGCCACCGAUCCCUGCUGCCAGGUCGCUGCCGACGCCUUCCGCACCGAGCUGCUCCUCGCCGCGCCGCCACGACGACGACGAUAGACUCCUCAGCAAGUCGCUCCUGCCGACCACCUAGCUAGCUAGCUAACGUCUUGACGAUGUGUUUGUGGCUAGCUAGAGCUCUGAUGCGGCAGCUUGUAUGGUGUGGCUGGGAGACGACGACGCAGCGUGCGCGAGAGGAUGGGAGUCACGAGCUCCAGCCUUAAGGGAGGGGAAGGAGCAUAAAAAAAAAUUGAGGGAUGGAAAGAGAAAUAAAAAGUUAAAAACAGAGAGAAGACAAAAUAGAAAAAAAUUUGGAAGAUUGGAAGAGAGGUUCAGAAAAUUUAAUUCAGUGGCUCAUGACCGUUGUUCUAAAGGUCAUGAUCAUGUAGAUAUGCCUGCAGUUCGCUGCCGAGGUGCAGGAUAGCUAGGAAGGAGAUAACUGGAGCAGUACUUGUGUCAUAGACUGAUUGACAGUGCCGAUCGACGAGUUGCAUCGAGAACACUGGGCUUUUGGUCCCAUAGCUUCAAACAAAAAGACCGCUUUGUAGUUUCAAUCUGGAAAUCCAUUUUCGUUGGUCCCAUGCAGUGAUGACUUUACAUAUAUAUACUAACCCUCUACUGACUGGACGGGUGAUUUGAUCUUUGCAUAUAAUGGCCCUGCACUGAUUUGAUCUGGACUAGCAUAAUUAGUAUAAAUGAAAAUUGAGCUCCACACUGCGCCGGCAACCCCGGCGGGCAACCUCUGCACCGCCACCUCCCCUGUCGUCUGGUUUCCACCGCCGGUAAGAAAUUGCAGAACCCCACGUUUAAUUUAAUUAAAGAUCUUUUCUGUUCAGAGCUGCAGAUUAGGUGUUUAAUUUCUUCAUGGCACCCUUUGUGCAGAAGGAAUUGCUCAAAUCAGACACAAGUGAAGCUAUUUGAGGGAUCACUAGCUGUACCAAUUUCUUUCCAGUCACAUUGGUGAACAAAAUUGGUAUAGGUACUGCAACUGGAUCAGUCGCACAGAACUUUCUCCAAAUUGGAUUGGCCUCACUCCUGAUGACUACAUAAACAUCAUGGAAAAAAUUGUAUGCGAUAUGUGUUUGAUCCUAGGAAGUAUGUGAUGUGGAUUUGGGUGAUCUUACCGUCUUGUUGGCUUUUACAUGGCAUGAUUGACAGUGUGUAAAUAAAAUCAUUUAGUGCUCUGUAAAAAUAUAUGUUGCUUGUUGAUGUCUUAAUGGGCAUGGAUAACAUUGUCAUCUUACAUAAAUGCUAUGAUUUUUUUUUCA
Sequence
(XR_003241349.1):
UCUCUCUCUCUCUCUCGCUCUCCCACUCGCACCUGCGCCAGCGCCGCAUCCCCAAUCCCGCUCCCGCACGCGCUGACGCCGGAAACUGCUCCGCCAUCAGCGCUCCCCUCCCCAACAGCCUCGCCGAUCUGCCCCGCACGUCGUCAAGGGUGCCGGCUCGCCGCAGUCUACAUCGCCGCCCACUCCGUCGUCAUCGAAUCCGUCCUCGGGCAGGAAUCACGUCGCCGCCGAUGCCCUCUGCGCCGAUCUGUUCCUCACCGUCACCGAUCCCCGCUGCCAGCUCGCCCUCCACCGACCCCCCGCCGGAAGCCCUUCUGUCGCCAGGUCUCCGCCAAUGCAUUCCACACCGAGCUGCUCCUCGCCGCCACCGAUCCCUGCUGCCAGGUCGCUGCCGACGCCUUCCGCACCGAGCUGCUCCUCGCCGCGCCGCCACGACGACGACGAUAGACUCCUCAGCAAGUCGCUCCUGCCGACCACCUAGCUAGCUAGCUAACGUCUUGACGAUGUGUUUGUGGCUAGCUAGAGCUCUGAUGCGGCAGCUUGUAUGGUGUGGCUGGGAGACGACGACGCAGCGUGCGCGAGAGGAUGGGAGUCACGAGCUCCAGCCUUAAGGGAGGGGAAGGAGCAUAAAAAAAAAUUGAGGGAUGGAAAGAGAAAUAAAAAGUUAAAAACAGAGAGAAGACAAAAUAGAAAAAAAUUUGGAAGAUUGGAAGAGAGGUUCAGAAAAUUUAAUUCAGUGGCUCAUGACCGUUGUUCUAAAGUUCGCUGCCGAGGUGCAGGAUAGCUAGGAAGGAGAUAACUGGAGCAGUACUUGUGUCAUAGACUGAUUGACAGUGCCGAUCGACGAGUUGCAUCGAGAACACUGGGCUUUUGGUCCCAUAGCUUCAAACAAAAAGACCGCUUUGUAGUUUCAAUCUGGAAAUCCAUUUUCGUUGGUCCCAUGCAGUGAUGAAAAUUGAGCUCCACACUGCGCCGGCAACCCCGGCGGGCAACCUCUGCACCGCCACCUCCCCUGUCGUCUGGUUUCCACCGCCGGUAAGAAAUUGCAGAACCCCACGUUUAAUUUAAUUAAAGAUCUUUUCUGUUCAGAGCUGCAGAUUAGGUGUUUAAUUUCUUCAUGGCACCCUUUGUGCAGAAGGAAUUGCUCAAAUCAGACACAAGUGAAGCUAUUUGAGGGAUCACUAGCUGUACCAAUUUCUUUCCAGUCACAUUGGUGAACAAAAUUGGUAUAGGUACUGCAACUGGAUCAGUCGCACAGAACUUUCUCCAAAUUGGAUUGGCCUCACUCCUGAUGACUACAUAAACAUCAUGGAAAAAAUUGUAUGCGAUAUGUGUUUGAUCCUAGGAAGUAUGUGAUGUGGAUUUGGGUGAUCUUACCGUCUUGUUGGCUUUUACAUGGCAUGAUUGACAGUGUGUAAAUAAAAUCAUUUAGUGCUCUGUAAAAAUAUAUGUUGCUUGUUGAUGUCUUAAUGGGCAUGGAUAACAUUGUCAUCUUACAUAAAUGCUAUGAUUUUUUUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.68%
ME_num:
MEP:
45.73%
HE_num:
HEP:
36.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
20.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.01338204720613 | 0.00422927383022929 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.08436155149913 | 3.21618756694125e-08 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.17199313735405 | 0.0228378699527875 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.17206432729012 | 0.0232559022007615 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.17216299102834 | 0.0228851637915628 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.74563648592979 | 3.1789456142066e-10 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.4501367887278 | 2.95790979379127e-06 |