Chr:
Chr3
Start:
20432696
End:
20435479
Strand:
-
Ref_name:
LOC107280310
Sequence
(XR_003241253.1):
CCGAAGUCUCCCCCUCAGCCUUACCUCCCGCACCCAUCCCCGUCAGCCGAAAAUCACGCCUCUCAGAUUGCUCCUCCUCCCUCGCGCUCUCACGACGCCCCACCGAUCGACGCUGCCAGCGCGACGGCGCCCCUUCCCGCAUCCCUCUCACCAUGCCAUUGCCUCCCCUAACCCUAAUCGCGCCGCCGGUCGCGCGAUCUCCUCCCUUGCCGCCUGCGCGCACCGGUCUGCAUCCUUGCCGCAGGAUUUAAAGAAGCCACCUGCGCGCGGCGAUCCCUCCCUCACCUCCGCGCCCCCGGUCUGCAUCCGCGCUGCCCCCGAUGAUCCAUCAUCCAUGGCCCAGGUGCUGUUGUUGAGAACCUGUCCGCCCCAAUCAAACCUCUACACCAUCCUUGCACCUAAAGACCUCGCCUGCGGGAUCCCCUCUGGACCCGCGACGCCUGCCUCGAUGUGGACGCCGCCGAUCCAUUGCGGUUGUCACGAGGCACUGACCCUUCCACGGCAACCCCGUCAGGGCCACAGUCUGCUCCACCUCCGUGCUUUGCUACCACAUCUAGCUCGAUCCGGAACCCACCACCAUAACUUGCCGUCAUCAAAGUUGGUUGGUGUUCACAUAAUCGUGGUGAUCUUUCUUCUUAGCCAGUUAUGUGCUUGCCGGAGAAGUGAUGAAUCUGCCAACUGCAGCCAUGCAUCCAUUUGCUUCAUGCCUUACGAUGCCGUGUCUAAGAAGUUCAUAUAUCUGACCAAAGUAACGCACUUGCCAAAUUCAGUUCCAGAACAACAUGCAAACUACCACUAAAACCAAAAGGUGACCCGAACAUAUCGUCAUGGUUCCACUGUUGGGCGGGCACAGAGGAGCAGCAGCCUACGGUGCUACCUGGAGACUAUAGGUGAGAUCAAGCUAAAGAUGAAUAAUUCAUUUUCAGACAUCGUCAUGAAUUGAAUUACUGACAGAUGCAAAUUAGAAACCUGACAAGCUAUCAUGAACUAACACAAGAAAAUAAUACACUUUUUACAAAAGCCUAAAUCAUCUUGUACUAUGUAGCAUUCAAUCUUGACAAAACUGAAAAGAGGGCUACAUAUUUCUUCUGUCCUUGCUGGAGGUUGGAAGUUGUAUGCAGCUAGCUAGAUCACUUUCUUAUCACAUUAUUAUUGUUGCUUCACUAGCUAUAAUUUGGAUUCGAACUUGAUAUAUAUGCAGUUCCAAGUUGUAUGGUAGACUGGGAGACUUGUCUAUUCUCGAUCACUUUUCGACAGACAGACAGACAGACACAAAAUUUGAUUCUUGUCCCUUCAAUGAUCUAUUUUUAUAUGCUGUAGUGUACUUUAGUUUGUGCUUUUGCAUGCUCAAUUUGGAUUGAUGUGAGUUGGUAUGGACGGGAGCUAUGAUGAAUUGUCUAAUUUUGAAAUCACUCAAUUACAAAAUUUUGUGGAUAAACACCAUUUUCUCCUGGAGUGAUGCAGCAUAGCUUCUAGCUGACUAGCUAUUGAAAGUCUGUCCGUUAACUGCACUCUGGACUAGAGAUGCAUAUGGAAGCAAUUUGUUAUGGUUUAACUCUAAUCACGAUUGGUGAAUAUGAAAAUAUUUUUGUGAAAGAGAUUAAUAAAGCAAGGCGAGUAUUAAUUUGUCACUACUUAAAUUUUAUGUUUUGGCGUAUUGCUGUAAUUAGUUGUGGUCCCAAAAAUACUGUUACUAUGCCCCUGAGAAUAUUACUGAUUUGUUUGUUUGGCUAGGUUUCACCUCAUCAAGUCGCUAUACUGGUUGAUGUAUCCAGAAUUGGCGUGGCCACAAUUGUUCUAGGAUUUAUAUAUCGCUAAUUUAUUUUCGAUCAAUUUUCUUUUCCUUUUCGGAAAAUGUGAGCAUUUCAAUAGAAUAUUCUUUUUCAUUCUGAUGUUUCAGUAUUCGUACAAAGAGAAGCACGCCAUCCUGAUCGAGCUGAUUGUAACCUCGGUUUCUUUUGCUCAAUUUUUUCAUAAAUCUGGGGAUUGGGAAUUUCUACUCGUGGAGCAACAACGUUUCUAUUUUUCUUUUCUCAGCACAUACGUGGAUCACGAAGUCAUUGUUAUUCCAUCCUUCAAAUCCAAAGCUCAUUGUUACUUGUUCGAUGGAUGGUUUUUACUCUUUGGAUCUCGAAGGGAUAAAGUUGAGCAAUGACUUAAGAGUUGAGCAACUUUAUCCCUUUGUUUGUGCGCGCGGAAAACAAAGGGAUAAAGUUGGAAACCAUGACUUAAGAGUUAAGAACACACCUAAAUUAAGAGAGAACUAGCAUGGUGGUCCGCGCAGAUUGCGCGGCUAUUAUCAUUAUAUUUUCUCUCAUAUAAUAGCAUAUAGUAUAUUUUUUGCGCG
Sequence
(XR_003241252.1):
CCGAAGUCUCCCCCUCAGCCUUACCUCCCGCACCCAUCCCCGUCAGCCGAAAAUCACGCCUCUCAGAUUGCUCCUCCUCCCUCGCGCUCUCACGACGCCCCACCGAUCGACGCUGCCAGCGCGACGGCGCCCCUUCCCGCAUCCCUCUCACCAUGCCAUUGCCUCCCCUAACCCUAAUCGCGCCGCCGGUCGCGCGAUCUCCUCCCUUGCCGCCUGCGCGCACCGGUCUGCAUCCUUGCCGCAGGAUUUAAAGAAGCCACCUGCGCGCGGCGAUCCCUCCCUCACCUCCGCGCCCCCGGUCUGCAUCCGCGCUGCCCCCGAUGAUCCAUCAUCCAUGGCCCAGGUGCUGUUGUUGAGAACCUGUCCGCCCCAAUCAAACCUCUACACCAUCCUUGCACCUAAAGACCUCGCCUGCGGGAUCCCCUCUGGACCCGCGACGCCUGCCUCGAUGUGGACGCCGCCGAUCCAUUGCGGUUGUCACGAGGCACUGACCCUUCCACGGCAACCCCGUCAGGGCCACAGUCUGCUCCACCUCCGUGCUUUGCUACCACAUCUAGCUCGAUCCGGAACCCACCACCAUAACUUGCCGUCAUCAAAGUUGGUUGGUGUUCACAUAAUCGUGGUGAUCUUUCUUCUUAGCCAGUUAUGUGCUUGCCGGAGAAGUGAUGAAUCUGCCAACUGCAGCCAUGCAUCCAUUUGCUUCAUGCCUUACGAUGCCGUGUCUAAGAAGUCCUCCACUGCUCACCACCAUUCAAUCAUAUUUUUCAUAUGUGCAUUUUCAGGUUCAUAUAUCUGACCAAAUUAGAAACACGUUUCAGGUUCAUAUAUCUGACCAAAGUAACGCACUUGCCAAAUUCAGUUCCAGAACAACAUGCAAACUACCACUAAAACCAAAAGGUGACCCGAACAUAUCGUCAUGGUUCCACUGUUGGGCGGGCACAGAGGAGCAGCAGCCUACGGUGCUACCUGGAGACUAUAGGUGAGAUCAAGCUAAAGAUGAAUAAUUCAUUUUCAGACAUCGUCAUGAAUUGAAUUACUGACAGAUGCAAAUUAGAAACCUGACAAGCUAUCAUGAACUAACACAAGAAAAUAAUACACUUUUUACAAAAGCCUAAAUCAUCUUGUACUAUGUAGCAUUCAAUCUUGACAAAACUGAAAAGAGGGCUACAUAUUUCUUCUGUCCUUGCUGGAGGUUGGAAGUUGUAUGCAGCUAGCUAGAUCACUUUCUUAUCACAUUAUUAUUGUUGCUUCACUAGCUAUAAUUUGGAUUCGAACUUGAUAUAUAUGCAGUUCCAAGUUGUAUGGUAGACUGGGAGACUUGUCUAUUCUCGAUCACUUUUCGACAGACAGACAGACAGACACAAAAUUUGAUUCUUGUCCCUUCAAUGAUCUAUUUUUAUAUGCUGUAGUGUACUUUAGUUUGUGCUUUUGCAUGCUCAAUUUGGAUUGAUGUGAGUUGGUAUGGACGGGAGCUAUGAUGAAUUGUCUAAUUUUGAAAUCACUCAAUUACAAAAUUUUGUGGAUAAACACCAUUUUCUCCUGGAGUGAUGCAGCAUAGCUUCUAGCUGACUAGCUAUUGAAAGUCUGUCCGUUAACUGCACUCUGGACUAGAGAUGCAUAUGGAAGCAAUUUGUUAUGGUUUAACUCUAAUCACGAUUGGUGAAUAUGAAAAUAUUUUUGUGAAAGAGAUUAAUAAAGCAAGGCGAGUAUUAAUUUGUCACUACUUAAAUUUUAUGUUUUGGCGUAUUGCUGUAAUUAGUUGUGGUCCCAAAAAUACUGUUACUAUGCCCCUGAGAAUAUUACUGAUUUGUUUGUUUGGCUAGGUUUCACCUCAUCAAGUCGCUAUACUGGUUGAUGUAUCCAGAAUUGGCGUGGCCACAAUUGUUCUAGGAUUUAUAUAUCGCUAAUUUAUUUUCGAUCAAUUUUCUUUUCCUUUUCGGAAAAUGUGAGCAUUUCAAUAGAAUAUUCUUUUUCAUUCUGAUGUUUCAGUAUUCGUACAAAGAGAAGCACGCCAUCCUGAUCGAGCUGAUUGUAACCUCGGUUUCUUUUGCUCAAUUUUUUCAUAAAUCUGGGGAUUGGGAAUUUCUACUCGUGGAGCAACAACGUUUCUAUUUUUCUUUUCUCAGCACAUACGUGGAUCACGAAGUCAUUGUUAUUCCAUCCUUCAAAUCCAAAGCUCAUUGUUACUUGUUCGAUGGAUGGUUUUUACUCUUUGGAUCUCGAAGGGAUAAAGUUGAGCAAUGACUUAAGAGUUGAGCAACUUUAUCCCUUUGUUUGUGCGCGCGGAAAACAAAGGGAUAAAGUUGGAAACCAUGACUUAAGAGUUAAGAACACACCUAAAUUAAGAGAGAACUAGCAUGGUGGUCCGCGCAGAUUGCGCGGCUAUUAUCAUUAUAUUUUCUCUCAUAUAAUAGCAUAUAGUAUAUUUUUUGCGCG
Sequence
(XR_003241254.1):
CCGAAGUCUCCCCCUCAGCCUUACCUCCCGCACCCAUCCCCGUCAGCCGAAAAUCACGCCUCUCAGAUUGCUCCUCCUCCCUCGCGCUCUCACGACGCCCCACCGAUCGACGCUGCCAGCGCGACGGCGCCCCUUCCCGCAUCCCUCUCACCAUGCCAUUGCCUCCCCUAACCCUAAUCGCGCCGCCGGUCGCGCGAUCUCCUCCCUUGCCGCCUGCGCGCACCGGUCUGCAUCCUUGCCGCAGGAUUUAAAGAAGCCACCUGCGCGCGGCGAUCCCUCCCUCACCUCCGCGCCCCCGGUCUGCAUCCGCGCUGCCCCCGAUGAUCCAUCAUCCAUGGCCCAGGUGCUGUUGUUGAGAACCUGUCCGCCCCAAUCAAACCUCUACACCAUCCUUGCACCUAAAGACCUCGCCUGCGGGAUCCCCUCUGGACCCGCGACGCCUGCCUCGAUGUGGACGCCGCCGAUCCAUUGCGGUUGUCACGAGGCACUGACCCUUCCACGGCAACCCCGUCAGGGCCACAGUCUGCUCCACCUCCGUGCUUUGCUACCACAUCUAGCUCGAUCCGGAACCCACCACCAUAACUUGCCGUCAUCAAAGUUGGUUGGUGUUCACAUAAUCGUGGUGAUCUUUCUUCUUAGCCAGUUAUGUGCUUGCCGGAGAAGUGAUGAAUCUGCCAACUGCAGCCAUGCAUCCAUUUGCUUCAUGCCUUACGAUGCCGUGUCUAAGAAGUCCUCCACUGCUCACCACCAUUCAAUCAUAUUUUUCAUAUGUGCAUUUUCAGGUUCAUAUAUCUGACCAAAUUAGAAACACGUUUCAGGUUCAUAUAUCUGACCAAAGUAACGCACUUGCCAAAUUCAGUUCCAGAACAACAUGCAAACUACCACUAAAACCAAAAGGUGACCCGAACAUAUCGUCAUGGUUCCACUGUUGGGCGGGCACAGAGGAGCAGCAGCCUACGGUGCUACCUGGAGACUAUAGGUUUCACCUCAUCAAGUCGCUAUACUGGUUGAUGUAUCCAGAAUUGGCGUGGCCACAAUUGUUCUAGGAUUUAUAUAUCGCUAAUUUAUUUUCGAUCAAUUUUCUUUUCCUUUUCGGAAAAUGUGAGCAUUUCAAUAGAAUAUUCUUUUUCAUUCUGAUGUUUCAGUAUUCGUACAAAGAGAAGCACGCCAUCCUGAUCGAGCUGAUUGUAACCUCGGUUUCUUUUGCUCAAUUUUUUCAUAAAUCUGGGGAUUGGGAAUUUCUACUCGUGGAGCAACAACGUUUCUAUUUUUCUUUUCUCAGCACAUACGUGGAUCACGAAGUCAUUGUUAUUCCAUCCUUCAAAUCCAAAGCUCAUUGUUACUUGUUCGAUGGAUGGUUUUUACUCUUUGGAUCUCGAAGGGAUAAAGUUGAGCAAUGACUUAAGAGUUGAGCAACUUUAUCCCUUUGUUUGUGCGCGCGGAAAACAAAGGGAUAAAGUUGGAAACCAUGACUUAAGAGUUAAGAACACACCUAAAUUAAGAGAGAACUAGCAUGGUGGUCCGCGCAGAUUGCGCGGCUAUUAUCAUUAUAUUUUCUCUCAUAUAAUAGCAUAUAGUAUAUUUUUUGCGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.15%
ME_num:
MEP:
27.44%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.87
Avg Expression:
5.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.74448396246788 | 0.0319000157581816 |
| 2 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.04524794096477 | 0.00905260710755853 |