Chr:
Chr3
Start:
6630396
End:
6633615
Strand:
-
Ref_name:
LOC107280249
Sequence
(XR_001544267.2):
UCAGCCCGGUCUGUUAGAGAUGCUCAUAGCGAUAUAUUGUGCGUGUAAAAUAAAUUUCAGAAGACAGGAAGCAUUUUAUUGAACACACUCAGUGCACAUUUAUGGUGGUCUACAUUUUUUCUUGUUUGCUUAUGACUUGCGAUAUUUGCAAUGUACAUUCAUGAAAUCUGGCUGUCGUCUGUACGUACAUAUCGAAUGAGCAGUUUUUGUACACUUUAGCUUGUCCCUAUCUAUGGGGAGCAGUCACCUUAAUUUCUUAAUGUGUUCGGCCCUUUUCAUUUAUUUUCUGAACUUAUGCGACCGGCGACUUACCUUUGCUGUACUAUUGGGUACUCCCUCUGUCUCAUUUUUUGCAUACAUGAUUUUUCGUGCCCAAUUUAGACCAUCCGUCUUAUUUAAUUUUUUUUAAAAAAGUUAAAACAUAAGUCACGUAUAAAGCACUAUUUAUGUUUUAUCAUCUCAUAAUUAUAAAAAUACUAAUUAUAAAAAAUUUAAAUAAGACAGACGAUCAAAAUUUUAGUAUAGAAACUAAUGGUUGCUUUUAAAAUAGGACGGAGGGAGUAUUGUUUAGUUCGUUUGAUUUACAUUUGUCUUGCCUAGCUUUUGGACAAGUAACUCUGUUUGUUUGAAUGAAGCUUCACAAGAAUGCAAAGAAGAUACUCCAUUUUGUAGUACAUCUAUAGCUCAUAGGCCCAGUUUAAUUCUUGACCUCAAAUUUUUCACGUUUAUUAUGCAAACGAACGACCUACAUUUUGCGUUAUGUGUUGGUGUGGGUUGUUCAUGGUCAUGUGCCCGUCAAAAUUCUUUAAGAUCACGUGGCGCCCCAAUCAAACAUAGAAAAAAAUUUGUUCAGGUCAAUCCCUCCUUUUUGUUAGAAUUUUGUUCAGGUCGAUCAAGGUCAAGUCCAUUCUUCAAUCGCACGACGGCAUCACCAAAAUUCAAUUUCUGGAAUAAGAACUCCGAAGUCUCCGAUCAUUUUAUGCACAAUUGGUGUGGAUCGACCAGGACCCGUUCAGAUCCACGAAAUUAGCAAGGAACCAAAUCUGGGACAGUGACCUUAAAUUGGGCCUCAUUUCUGCAUCAUAUAGCAGGCAUUAAAAGAGAAGCACACUUUGCAGACUUGCAGGGAAUCAGAUCGACGCCAUGAUGAAACAAAUGCAAAACAAGAAUUCCAGAUGCGGGCUGCACCGAUCAGAUUCUGCACGCCACAUGAUCCUCGGCUAAGUGAAAGGGGGAGAAGGAGAUGAAAGAGAUCAGUUGAAAACGAGUAGGAUCAUCAUCCCGAACGGGUGGAUGAAUGGGCUCUCAUCCUCUCACCGCGAUUGUGCGUCGUAACCGCUAUUAUCAGCAAGAGGUAUCGCCGCUUGCCGCGAAGUACAGCAACGUACAGUUACACCUCUUGUUGCUUCUUUCUCUUCGUUUUGUUCUGACGCCAAAAGGAAAUUAGGAAAUUCUGAAAGGGACAUGUGAGUUUGCUGUGUGACAAACUGACAAUAUGAGGUGCAGCUUUUCAGCGUGCUCUGGGCCUCUUAAACUAUGAAUUUCUGAGCACUGAAAUGAAGUGAGCAAUACAAACAGGAAACCAUGUGGUCCUUACGCCAGAAGGUGUCAAUUGUGAUAUGAUAUUCGUUGUUUCUUUGUAAAAUUGUGCUGUUAGCCUGUUGCUGUUACAGUGUGAUCAUUUUGCACUUCAAUCAGCUUGUUUUGGGAGUGUAGGGAGUACUGGUGAACUUCAUUUUUGCAAGUCUGUUGCUACUGACUUUCUGCCAGACCUUAUCCAAGAAUUACUAGCAGCCACACCAUCUUGAACCGCAGUGUUUGCAGCUUACUAUUUGUUCUUACAGGACAAGGUAUUUAGUUAUCUGAGAGGAAUAAAUAUUCAACAGUGAAGUAAGCGUCCUGAUUCUUGUUAAGUC
Sequence
(XR_001544268.2):
UCAGCCCGGUCUGUUAGAGAUGCUCAUAGCGAUAUAUUGUGCGUGUAAAAUAAAUUUCAGAAGACAGGAAGCAUUUUAUUGAACACACUCAGUGCACAUUUAUGGUGGUCUACAUUUUUUCUUGUUUGCUUAUGACUUGCGAUAUUUGCAAUGUACAUUCAUGAAAUCUGGCUGUCGUCUGUACGUACAUAUCGAAUGAGCAGUUUUUGUACACUUUAGCUUGUCCCUAUCUAUGGGGAGCAGUCACCUUAAUUUCUUAAUGUGUUCGGCCCUUUUCAUUUAUUUUCUGAACUUAUGCGACCGGCGACUUACCUUUGCUGUACUAUUGGGUACUCCCUCUGUCUCAUUUUUUGCAUACAUGAUUUUUCGUGCCCAAUUUAGACCAUCCGUCUUAUUUAAUUUUUUUUAAAAAAGUUAAAACAUAAGUCACGUAUAAAGCACUAUUUAUGUUUUAUCAUCUCAUAAUUAUAAAAAUACUAAUUAUAAAAAAUUUAAAUAAGACAGACGAUCAAAAUUUUAGUAUAGAAACUAAUGGUUGCUUUUAAAAUAGGACGGAGGGAGUAUUGUUUAGUUCGUUUGAUUUACAUUUGUCUUGCCUAGCUUUUGGACAAGUAACUCUGUUUGUUUGAAUGAAGCUUCACAAGAAUGCAAAGAAGAUACUCCAUUUUGUAGUACAUCUAUAGCUCAUAGGCCCAGUUUAAUUCUUGACCUCAAAUUUUUCACGUUUAUUAUGCAAACGAACGACCUACAUUUUGCGUUAUGUGUUGGUGUGGGUUGUUCAUGGUCAUGUGCCCGUCAAAAUUCUUUAAGAUCACGUGGCGCCCCAAUCAAACAUAGAAAAAAAUUUGUUCAGGUCAAUCCCUCCUUUUUGUUAGAAUUUUGUUCAGGUCGAUCAAGGUCAAGUCCAUUCUUCAAUCGCACGACGGCAUCACCAAAAUUCAAUUUCUGGAAUAAGAACUCCGAAGUCUCCGAUCAUUUUAUGCACAAUUGGUGUGGAUCGACCAGGACCCGUUCAGAUCCACGAAAUUAGCAAGGAACCAAAUCUGGGACAGUGACCUUAAAUUGGGCCUCAUUUCUGCAUCAUAUAGCAGGCAUUAAAAGAGAAGCACACUUUGCAGACUUGCAGGGCUACAUGCUGCCUGUAUGCAUGGCGACAAGGAUGAAACAUUGAAUAUGCUUAGGGCUCCGACGACCUAGCGUACCCGAUGUCCCGAUGAAAAUGAUGCAAUUCUUUUUUCUGUAUACUGAUCCGUGAACUAUGGAAAUGUCACUUGUAAAUUGCUAUGGGUAGAAGCUUUCCUUGCCAAAAAGAUCAUUCUUUCUUUGUGAAAGCAACAGGGAAUCAGAUCGACGCCAUGAUGAAACAAAUGCAAAACAAGAAUUCCAGAUGCGGGCUGCACCGAUCAGAUUCUGCACGCCACAUGAUCCUCGGCUAAGUGAAAGGGGGAGAAGGAGAUGAAAGAGAUCAGUUGAAAACGAGUAGGAUCAUCAUCCCGAACGGGUGGAUGAAUGGGCUCUCAUCCUCUCACCGCGAUUGUGCGUCGUAACCGCUAUUAUCAGCAAGAGGUAUCGCCGCUUGCCGCGAAGUACAGCAACGUACAGUUACACCUCUUGUUGCUUCUUUCUCUUCGUUUUGUUCUGACGCCAAAAGGAAAUUAGGAAAUUCUGAAAGGGACAUGUGAGUUUGCUGUGUGACAAACUGACAAUAUGAGGUGCAGCUUUUCAGCGUGCUCUGGGCCUCUUAAACUAUGAAUUUCUGAGCACUGAAAUGAAGUGAGCAAUACAAACAGGAAACCAUGUGGUCCUUACGCCAGAAGGUGUCAAUUGUGAUAUGAUAUUCGUUGUUUCUUUGUAAAAUUGUGCUGUUAGCCUGUUGCUGUUACAGUGUGAUCAUUUUGCACUUCAAUCAGCUUGUUUUGGGAGUGUAGGGAGUACUGGUGAACUUCAUUUUUGCAAGUCUGUUGCUACUGACUUUCUGCCAGACCUUAUCCAAGAAUUACUAGCAGCCACACCAUCUUGAACCGCAGUGUUUGCAGCUUACUAUUUGUUCUUACAGGACAAGGUAUUUAGUUAUCUGAGAGGAAUAAAUAUUCAACAGUGAAGUAAGCGUCCUGAUUCUUGUUAAGUCCAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.99%
ME_num:
MEP:
11.38%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.80
Avg Expression:
0.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.24617450401421 | 0.00103437763514739 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.18905026054549 | 0.0136982893568068 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.16606261420561 | 0.00230407599020487 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -5.02601563162264 | 0.00572912893131182 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.27032176032319 | 0.000319217903196548 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.41317449821809 | 0.0359045347142757 |