Chr:
Chr3
Start:
26184930
End:
26186387
Strand:
-
Ref_name:
LOC107280247
Sequence
(XR_003241145.1):
AUCGCUACUGCCGAUGUUUUGUAUUGUAUACACCACUGCAUGUGUAAUGGGAUCGGUCUCUCACCUCUUGCCAUAUCUCCAUUUCAGGAACACAUGAGGACACUGGCACGAUUUGACACUGCCUGAUUGCUGGCUGUUUGUGUCAUGCAUUGCCUCCAUGUGAGCCGACGAGGUGACCCCCCCUUGGCGGCUGAAUCAAGAGGCUGAAAUGAAAUGAUAAAACCUGCAGGAUGUUCAGUACCAAUCAGGUUUUUCUCUGAAACCGUGGGCUGGGUGGUAUAGUAUGCUGUCUGUCUGGAAAGAUAUGGAGAUAAUUUGUCAUGAUAUUUGUGAACAUCUUAUCUCUGAAACCAUGGAUCUUUUUCCAUUGAUCAGUUGCUGCUGCUAUUAUAGAGACUGACACACAUGUCACAAGAUCGUCAUGCUCUUCAGGGAAAAAAAAAAGAAGUGAUGAAGCUGCUGCUCAGUACACUUUUAUGUGAGCUAUCUAAUGAAUAAUGUGGUCACAGAUUCACAAGAAACCGGUGAUCCCUUGUCUUCUCAAGCUCAACGGAAAUUGAGCUUCUGUUGGAAACUACGCUCCCCGUCUCUCCAGCCGAUUCGGCUUGGAAUUAUCCAAUGCUUCCAUGCGAAGGCCAAUGAUUUGGCACAUGGGAGCUGGUGGCCGAUGUCUUCGUCCUAACCAAACCAGAUGCUGCUGCUGCUGCAGCUCCCACAUGCUCCUGCUUUGCCCUACUCUGACUGACAUUUUGAUUGCCCAACGGCGGCCGGAUCAUCGCACAGCCACAGAUGCAGACUGCUCAUGCAAGAUGCAAGUGACUCGAGGUCUUUUGGUAAAGGUACGAGUAUAAAAAAAUGUACUUCAUGACAUUCAGCUGUUGCGUUUUUUUACCUUUAUUUUUUUGUUUUUGCCCAAAUUUUGGUUGAUACCUAACCUUGCCAUAACUAAGUUUAGACUAGUUGAGGCAUGGUGGCACAAGUGUGACUUAGAAAUAGUUGGCCACAAGUGUGGCAUACUUAGCUCCAAAUUUGAGAGUAUGACAUGUAUGUCCCAAACUAAGAAAGUAUGGCACGACACAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.35%
ME_num:
MEP:
61.18%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.80
Avg Expression:
4.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.70687470452198 | 0.0394714093523534 |
| 2 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -2.25864732052268 | 0.0103571418503412 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.70386997875892 | 0.000941674729608649 |
| 4 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.83283222655767 | 0.00478801103424208 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 3.00435915735958 | 8.62944023864564e-05 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.8777857123916 | 1.06946922833437e-05 |