Chr:
Chr3
Start:
15295729
End:
15297730
Strand:
-
Ref_name:
LOC107280228
Sequence
(XR_001544182.1):
CUCUCUUGCCCUUCCCCUGGCUAGUGAAUUUUUCGCCAUCGAUUUAGGGCUACGAUUUGCUUGUUUUUUUUUUUCCCUGUCAAUUUCUGCCCGUUGCUAAGCUAGCGAGUAGCUCGUAAUCUUUUGGGGUAGUUUUCCCCUGUACUAAGCUAUUUGAAUUAGUGGAAAUUUGUAUGCUUAUCUCCAGAUGCGGCCUAAAUAGUUGUUAUUGUGGCCCGCGGCUAUUGGUGUCCUAAACUUCAUUUUUAAUCUUUUGUGCUGUAUGCUUAACAAAUCUUAGAACUGGACUCAUGUGUUGGAAAUUUGUGGUUUCACUGCCACCACCUGAUGAUAUACACCUCUUUAUCUUAUGGAAAUCGCACUUCUGAGUGAUUAAUUGCAAAUGUUUUGGUGCUGUGUGCACGAGUCAUCAUCAACGGUGCUUUUCUGGCUGCAAUUGCUCUUUUAUGUUUCCAUCUUUUUUCCACUAGGUGAUUUGUGCUUUUUUGGGGAAACAAAUGAGGCAACCCUUGUCUAGUGGGCUGUGAAAGAAUCCCCUUCUUUUAUUAUAACUCUGUAACGUUGUUUCUCCUUUUGAUUUCCUGUUCUGAUUCAUAAAUAACACUUCUGUUCAAUAUGUGUUUGUUUCUAUUAAUUUAUAAUAACACUUCUGUUCAAUAUGUGUUUGUUUCUAUUAAUUUAUGAUUGUAAUGCAUGGUUACUCUAAAGCAGGUCAAUUCUUCUUUAUAUUUAUGCAUGUCAGUCAUUUAGUAUAGGAAGUCUAUAUGUUUUCUUUGCUGGUAAUGGUCCACUAUUUCAGGCUUUAACUGUUCAGAGAGUUUUAAUCUCAUAAGGUGUUCUUACACAGAUAUUGAGAUAAUUGUAAAUACAGUGAAACAUGUAAUGUACUUGUUAGAUCUCUUGUUGUCUUCUAUGUUCAGAGGCAUGCCUCCAAUUAUUGUGGAUGUCAAUCAAACAUUCUCAUGAAGCUGUACCAUUUUCUUCGUCUGUCCUCUUUGAGCAUGAAAUUCAUAGUAAUGUCAUUCCUCUCUCUGAAAAGUUAGAUCGUUGUCUAUGCUAAUCUGAUGAGGAAGAUGCUAAAUACAGUUCUUACUACAUGGAAGCUUGAGUUUGACAGUCUCACUAUUGUCCAUUUGUUAUCUAAUUAAUGUAAUUGCUUCAAAAGAAAAAUGUUGUUUUUGGACUGUGAUAGACAAUAGCUUCUUAUUACAUGUUGUACUAAACAUGUUGCAAUCUAAUUGAGUAAACUUUUUUUGUUGCGAGAAGAUUAAACUUAUUUAUGUUUUGGUUUGAUUCAGGAUGGGAGAACAGUGGUCUUAGUUAAAAAUGCUGCUAACUCCAUCCCAUAUUAAAGCUACUAUAUCCAUAAUAUGGGAUGGAGGUAAUAUCUUUUUAGGCUGAUUUCUGCUUUCUCCACUCAGCUUCCCAAUGUCAUGCUAAUGUCUACUACCUCCGCCCCAAAAAUCACUUUUCUACACAAAUCUAGAUAGUCACUUGUCUAGAUUUGUGUAGAGAAAAUGAUUGGAACAGAGGUAGUAGUUAUCUGUUGCCCUUAUGUGCAUCUUCAUGGUUAGUCUGUAGACCAAUCAACCUCUUCCUUCAUAUUGAGAAUCGAAAACUAAAUAUUUGCGUUGAUUUUAUCUAAAAAGAAUUUGCGGGUGGUGGUCCUAAUUUGCCAGUCAAAACAUUUUGGACAGUUGUAGAAUAUGUAUAAAUUCUUGAAUUUGUUUAAUUAGUGGACCUGAGCCUGUGACUACAUGGAGUGUACCGUUACCGUGUACAUGUCUCAACCUAUUGUUAGCUAAUCUGGUGAUUUUUUUUUUAAAAAAAAAAUUCAAGCAAGGUCCCUAACUUUGCCUUGAAAAAGAAAUUAAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.52%
ME_num:
MEP:
86.99%
HE_num:
HEP:
5.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.68
Avg Expression:
4.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.37079437750771 | 7.32782279804893e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.0967593449993 | 0.00347258972253203 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.15977507518589 | 0.000306978182484891 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.66931532886452 | 1.25548902513183e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.02358997085277 | 1.78967733584979e-06 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.89768076085432 | 0.00500835332240823 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.74300082094036 | 4.9156952622072e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.04564573130963 | 0.000616783672872051 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.35372703886211 | 1.77922907675367e-07 |