RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280226

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

9143571

End:

9150280

Strand:

-

Ref_name:

LOC107280226

Sequence
(XR_001544176.2):

AAAGAAGAGGAAGGAAAGAAAGAAUAGCAGCAACAAGCCAACAACCAAUGAAUGGAUCAGCUGGGGGAUCAAUACGAUGCAGAGAAGCACCAAUGCCGAUCAUCAGUUCUGGUGGUCAUACGAUGCGUUCUUGUCAAGUUUUCACGAUUCGACUCGUGCGAUUUUGUUCUGAAGCCUGUGUGUGUCUCCGUGGUGGUGAUGAUAUGUAAGUUUUGAUUAGUAAUUGUUUUCAUCGUUUUGCUGAUGAAUGCUGACUGCUUUUGUACAGGUGGUUGCUGCUACUCUGAUCGUGCUCGCCAGCCAAAACGCUUUUGGCAAUGCUUGCAAAAGGCACCCUUUCUUGCUUUUGGUAACGGGAAACAUUGUCCCCUAGCAUCUCGGAAUCUUUGAUAAUUCUCUCUAGCCAAAGCCGGCGCAAAAUUCUGUCGCAUUCAACUACCCGGUUUUUUUGAAACCGAAUUCAUCUCCGCCUCAGUUUGCGCCCUGCGCGUGUUACUUAUGAACUGUGACGGAAUGAACUGCGCCGGUAAAAAUAUAUCACUGCCUCGAUUCCCCUAUGCAAUAUCGGCAGCAUAGCAUCGACAAUCCGGCAGCCCAGUACGGUGUGCCCAUCCGGACGCCGCCAAGUACCGAAUGGAACGAGCCACCAACCAAACCCGCCCGUGCGCGAGGAGACCGCCGAAGAUUUUCCUUCCCCCCGCACUCUACUCACUCUCGUUGCCGCACGGGGCGAUCGGCCGGUGGAGCCGAGACCCCACGCAGCCGUGGAAACCCAGAUCGAUCUCCCAAGUCGUCACAACGCGCGCCGCGCGCGCGUGGAAUCCCCAAGCACGACACGAAAGGCCGGCCGGCUCGGGCACACACAUACGCACAUGGACGCACGCACACGGUGCCGUGCGGUCAAACUGGGCCUCUGGCCGUGCUGAGCGAGCGUUGAGAAUUGAGACGAGGAACCAAGGCUGCACCCGGCGGGGUGAUGCGGUUUCGUCGUCAGUCGUCACACGUGCGCGUUGGGGAGGUGUAGCCGUGUAGGGGCCGGGGCAAUCAACCGCGAGCGAGGCGCUGUAGCGGGCGCUCCACCGGUGCAAUCGGAGGCCGAAACGUGCGCGCGCGACAGGAGGGGGGGAUAUGAGUUCCUGGCGGUGACGGCGACCGACGACCUUCCUUUCUCUCCGGAGGUGUGGAGGGGUGUGGGCUGGAUGGGGAUGGAGUCCAGUCCCCACUCCACUCCCCCCGGCGCCGAGGCAUGCUCGGCACCGCACGUGGGGGUGGCUGGGCCCCGCGCCAUCCCCUCCCACCGGACCUGGAUCCACCUCGCCGAUUUGACGCGCCCCCCGGCGUAGAGUAUGUACAAUCCUCCUCUUCGUCCUCUCCCCGGUGAGGUGUCGCGCGUCACGGACACGUAGUCGAGUCGAGACGAGACGACGACGACGCGCGGCGUGUGGUACACGGCGGGCGGCAACAGGUGCGGGGGAGCCAGCCCACGUGCGGCGGGUCCCAGCAGCCUCAUGUCCCUGUAGAGCGGCCGCGGCAAUACCUGCUCACGCGAACAACGACGUUUUUUUCAGCUUUCACACCAACCUGAGCACUGAAAAGCUUCAGAAAAUCUGCUCGGAUACCAUACCACAGCGACAGGGUGGCCAUGGCUGUGGCGACGAGAGGGAAGUUGGUGGCCUCUUGGGUCUUUGACUGAAACCGUGCAGGCAAGAUGCCGCAGGCACCACCAAUUCUACACGGUUACUGCUUACUACCAAGGUGUGAACAAGGUUUAACUCCCAGUUACCGGUUGGUUUUCUUCUGAAGGAGCAAAUGGCAAACGAUAUUUGCAUAUACAACUACACAUAGGCAGACACA

Sequence
(XR_003241397.1):

ACCGGGAUGACACAACGGUAGUACAAGUUUUAGGGACCGGUGAUAGACUUUACUCUAUAUAUUUUUCUUGCCUGAUCGGCUUGAAAAUCUGCCGGUGGAUUCAGAAAAGCUUCAGAAAAUCUGCUCGGAUACCAUACCACAGCGACAGGGUGGCCAUGGCUGUGGCGACGAGAGGGAAGUUGGUGGCCUCUUGGGUCUUUGACUGAAACCGUGCAGGCAAGAUGCCGCAGGCACCACCAAUUCUACACGGUUACUGCUUACUACCAAGGUGUGAACAAGGUUUAACUCCCAGUUACCGGUUGGUUUUCUUCUGAAGGAGCAAAUGGCAAACGAUAUUUGCAUAUACAACUACACAUAGGCAGACACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

463

LEP:

94.11%

ME_num:

24

MEP:

4.88%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.95

Avg Expression:

1.55

Tip: OSA-LNC107280226 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.008340323926090.0390956429659321
2BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs4.22686383393650.0207642011337119