Chr:
Chr3
Start:
18166526
End:
18171730
Strand:
-
Ref_name:
LOC107280210
Sequence
(XR_001544073.2):
CGCCCUCCCCACGCCACCGCUCGCCCUCCCCAAGCCGUGUCUCCGCCGCCCGCCCGCCUCACCAGCCACGUCGCCGCGCCGCCCGCCUCACCCGCCGCACUCCCCUCUCCCCUCUCCCCUCUCGUCGUCCCACUCAACUCACCGCAGUCCCCUCUCCCCUCUCCCUCGCGUCGCCUGCCUCCCCUCACCGCUGCCUCAGGAUCUCCUCCGCGCCGCCUCCUCGCUCCUGUAACGCCGCUGCGCGUGACCUCUCGCCGAAGAUCGCGUACUCCUGCCGCUGCCGGCGCUGCGAACAUCCUCCCCGUCGACCUCCGCGCCCCGGUCGCCCUCACUUGCAACACCCGCCCCUGCUGUUGUUGCCGCUGUCACUGUAGACGUCUUUGCUCCCUGGUGGCGUCGUCGAGCCCUGACGCCACCCGCAACAGACGACGCCACUGGCAACACAGCUGCCGUGGCCGGCAACGUAGCUGCUGCUGGAACCGCUCGCUUCCUUGAGACGCUCAUCGAGAGAGCCGACUGCCGGUGCGGCACUUCGACAUUAUGCUCUACCACAACGCUACAGAGUACCGAUCAGGAAUGCCCGUUUAUUGAAAAGCUAUGGUAUGUUAGCUACAUUUUAAACGAACAGGAUAUGAUUAUCUGAGCUUUGUCCAGCUCCAGUAUCUGAAGAUGGGAUGUUCAGUUUGUAAUCAUAGAACUCACGCGCAACAAUCUUGCAGUGGAAUCCAAUGAUUCACAGAAUACUGCAACGGUUUGAUCAGCGAUAAGCAGGUGAUAAAUGUUGGUGAUUGACUUAUGCCCAGGUUACCCACCUUGAUUUUGUGCCUACCUUGAAACAUGAAGCCUCGCUAUGAUUGUUCACCAUUCCAGCUUACCAGCUAUAUUGAAAUAUCAAUCUAUUCUGUCUUCCAGAUUACACAUAGUUCAUUAUGCUUGGGACAUAAUAAUACAGUAGUUGAUAUAAAUGUGCAGAAAAAACUGAAAGAAAUUUCGGACUGCUUAAUAUUUUGAUGUGAGUGGAUCACUGGUGCAUAUUGGAGUGACUGAACAAUGAUUCUCAUUGUACACUAUGAGAAUUUUCCGAAAUACUAUGUCCUGCUACAUGGUUGCUGAAUACAUUCAAGGGCAUUGCACUGUCUUUUGAUGAAGCUCCAAAUCAAAUUCACAUCUUAAUGCAAUCAAUUAUCAGGUAAUCAUGUAGUUCCUUGGCAAGAUCACAUUGGUAGGUAAGUUAAGGUUUGCAACUGUGGUUGAUGUCAGCAGGUCUUGCUAUUUUUCUUUUAAUUUAGUUUCAGUCCUCUAAUGUUUUUAUCUUGCACCUGUCACUUGCUAAAAUUUUAUUCAGUUUAUAUCCCUUUAGAAUUUUCAAACUUAAUGUGCCUUUCAGUUUUUUAGGCAGAAAUACUAAGUUGUAUUUAUAUAACAAAAUUUGAUGGAAACCAUCAUUAUGGUGAUUUCGCAUAGUGCACUAUGAACAUGUCAGCAUGUGAUUUCAGGAAAGUCAGUUGAUGUGUUUUCCUCAGAGAAAUAUUCCUGUUCUCAAGUCUUUCAUACCAACAUGUAGUGGUCAUUCUCUCAUUUGAGAGAAUCCAUUAUAUACCACUGACUUUGUCACACGUCUACGAUUUGCCACUGACUUUAUCAUGUUCUACAAUAUGCCAUCGACUUUUGGAUCUAUAAUCAAACAGUACAUUUUCAUCGUUACCUGAAGAUCAUCUGUUACAGCUAUUAUCCCCCAACAAUAAAGAACAUGCGGUUGUUUGCGAUGCUAUGUUAGGUGCAAUUUUUUAGUGUCUUUAAUUAAAAAAGAAUGAGUUUACGUGUGUACUGUGUUCAUCACAUAAAUGGUUUCUCAAAUUAAUAUCUGCACUUGGCCUCUUUGCAUACCAAACUUUAUAUUUCUCUAUAAGUACUCCAGUAGUCUACAAACUUUUGUUAUCUUGGAUUAACUUAUUUUGUUUCGAUAUGCAAGUCAUAUAAUUAAUCUUCUUGUAGCAGUGAAAUGGUCCAACCCCUUCCUCUUUUGAUAUGGGUUUUCAGCUGCUACUUUUCUUCUUUUUGCAGGAAUUUUAUUUGCAAAUUAAGCACUCAAUUCACUUCCCUCAAAUUGAUUCACAAACUUACACCCGCGCUUUUAAAUCUGUGCAGUUCAUUCAUCUAUGCAAACAUAAAUUAUUUAAUGUUAUAAUUUACUACUGUUAUUCUCUGUCCCAUGUUAAACCAAAAACCAUGUCUACCAUUGAAGCAAUUACUGUAACAAGUUCAUUUUGCCAGCUGAAUCUACCCAGCCACUUUUGCUGUAGCUCCAACCAAAAUAAGGUGGCUUUAUGGUCUCUGUGUGCCAUACAACUUUUAUAUAUUAAUUUAAAUUUAGUUUUACAUGGUCUGAACUUGGCCUUGCAUUGCUUAAGAACUUGGUUGACAACAGUCUGAAAUUGGCGUUGCAUUAUAUGCCAACCUGUGUAGUGUAAUGUAUUGUUUCUAUUCAGAACAUAAACAUGCAUAUUUUCCCUGUGAACCAUUGAUUAUGUACUGAGUUAAUUCCUGACAGCCUUUUGAAACGUGGAGUGUUUUUUUUAGGUUUUGUUGUUGUUUGAUUGCCAAAUGUUUAUAAUUUCAGUACAAAUUUCCUGGGAGCAAAAAAUUGCCAAUCACAUCUCAUGUUAUGUGCUCAAAAGAAACAAAACAAUAGAUGUCUGAACGUGCCUCUCAUUUUCUUUAUUUGGAGUCUUAUUUUCUGCCGUGCUGAUGACAAAUUCUUUAUAUAUACCUCUCAUUUUCUGUAUUUGGAGUCUUAUCUUGUCCUUGCAAUAUGUGUGAAAAAUAGAUGUCUGAACAUCUGCCAGAUUAGUGUUUGAACAUUUCUUAUAUUAUUUUCUGAGCAUUUGACAUAUUAGUUUAUGACUUGUUCUUAUGAUGUACGAGUAUCUGAAUUUAGAAUCUGAACUUGGGCAAGCAUCUAAAUGUUGUUCAAUGUUUUAGUUUGCUGUGAGCUAAUUAAUGUUAUGAAUUUCUUAUAGCUCAAGUAUUGGAAGUUUACAAAUUCACCGGUCGAUGUAAGGUUUUUCUGGGUUUAGUGUAAACAAUAUACUCAUAUUACCAUUCAAGGUUAUCUGAACGUGAAUAUGUAAUGUAUCUGAAUUCAGUGUGCGGACAUACUCUUGCCAUGUUUCUUAAGUCAGUGUAUGAAUAUGCUCUUGCAAGCACUAUUUUUCCCUGUAUUUUUAUUGUUAAAAUAUAUAUUAUAAAAACGUGCUAUGCACGUGCACUAUUACUAGUUAGAGAAGACGACCACAAUCCGUGGCGACGACGUUGUCGCCGCCGGCGCCGAUGCGGCAUGGACAGAGCAGCGACAUUGAAAUCUUCUCUCCUGGAGGGAGGAAGUGCGGCGACGGUGGCGCGAAGUGGUGCUGCGAUCGCAAGUACGAGCUUGUCAGCUACGAGCCUACGACGCGCUCCCGGCCUUCCUCAAGCACAACGAGUUCAUCAUCGACUACUACCGCAGCGAGUGGCCCAUCAAGCAGGCGCUCCUCAGCGCCUUAGUCGUCCACAACGAGACCAUCUUCCAGACGUAAUUAAGCACUCGAUCGAUCAAAAGCACGUAUAUUAGCUAAAGACGAUACUCUACCAGUAGAGAAACUAUCUUUUAUCGGUCGACCAAAUUCCAUAAUAGUUCUUGUUGCAAUAAAAACCAGGACUAAAAAACAUCUUUAGUCCCGAUUCAAAAGGUUAGAGCUACUUUUUAAUCUUUAAUCCUAGUUCAAAAAAGGUAGGCGGUGUCAGACCCCUCCUUUACCUUUAAUCCCGGUUGGACUAAAGAGCUAUUUCUAGUUCCGGUUGUUAAACAACCAGGAAAAAAAAGAUCCGCAUGCGCGGAGAGGAUGAGGCGUGCGCGCAACAUCGAGGAGGAGGAGGAGGCGCACGGGAUAAGUUAAUAAGUUCUAUCUCCUCCUCCCUCACCUUUAUCUCCUCUCCUCACUCACCCCAUCUCUUCCUCUUCCUCCUCUGGAUCCGCCCCCCUCCCCUCUCCUCCCCACUUCUCAGGAAGCGGAGGCGGCCUCGCGCAGUGGCGGCGGCCUCGUGUGGAGGACCGCGCCCGGUGGCGGCUUGCGCGGAAGGCCACGCGGCGGCAGGCGGUGGAGGCUGGCGCGGCUGCACGGAUUUUUUUUUUCUUUUUUCUUUCUUUGUGUUGAAUGAUUCGAUCUGUGUUGUCUGUGUUGAAUGUAUGAUUCGAUCUGUGUUGAGAAUGAACUAUGUUGUUAUGAAUGUUGUUGUGAAUGAUUUGGGAGGAACUAUGUUGUUGUGAA
Sequence
(XR_003241463.1):
CCUCCCCACGCCACCGCUCGCCCUCCCCAAGCCGUGUCUCCGCCGCCCGCCCGCCUCACCAGCCACGUCGCCGCGCCGCCCGCCUCACCCGCCGCACUCCCCUCUCCCCUCUCCCCUCUCGUCGUCCCACUCAACUCACCGCAGUCCCCUCUCCCCUCUCCCUCGCGUCGCCUGCCUCCCCUCACCGCUGCCUCAGGAUCUCCUCCGCGCCGCCUCCUCGCUCCUGUAACGCCGCUGCGCGUGACCUCUCGCCGAAGAUCGCGUACUCCUGCCGCUGCCGGCGCUGCGAACAUCCUCCGUAAGCUCCAUCACCCCUGUCAUCCUCGCUGGUCGCCAUGCCCAAUUCAAUCGCGUAUCCAAUACAAUCCCUAAUUUCACAUCGCACCAUGUCCCAAUCGUCGUUCCCAUCGCCAUUCCGCUCCUCCGAUGCAGCCGUCGACCUCCGCGCCCCGGUCGCCCUCACUUGCAACACCCGCCCCUGCUGUUGUUGCCGCUGUCACUGUAGACGUCUUUGCUCCCUGGUGGCGUCGUCGAGCCCUGACGCCACCCGCAACAGACGACGCCACUGGCAACACAGCUGCCGUGGCCGGCAACGUAGCUGCUGCUGGAACCGCUCGCUUCCUUGAGACGCUCAUCGAGAGAGCCGACUGCCGGUGCGGCACUUCGACAUUAUGCUCUACCACAACGCUACAGAGUACCGAUCAGGAAUGCCCGUUUAUUGAAAAGCUAUGGUAUGUUAGCUACAUUUUAAACGAACAGGAUAUGAUUAUCUGAGCUUUGUCCAGCUCCAGUAUCUGAAGAUGGGAUGUUCAGUUUGUAAUCAUAGAACUCACGCGCAACAAUCUUGCAGUGGAAUCCAAUGAUUCACAGAAUACUGCAACGGUUUGAUCAGCGAUAAGCAGGUGAUAAAUGUUGGUGAUUGACUUAUGCCCAGGUUACCCACCUUGAUUUUGUGCCUACCUUGAAACAUGAAGCCUCGCUAUGAUUGUUCACCAUUCCAGCUUACCAGCUAUAUUGAAAUAUCAAUCUAUUCUGUCUUCCAGAUUACACAUAGUUCAUUAUGCUUGGGACAUAAUAAUACAGUAGUUGAUAUAAAUGUGCAGAAAAAACUGAAAGAAAUUUCGGACUGCUUAAUAUUUUGAUGUGAGUGGAUCACUGGUGCAUAUUGGAGUGACUGAACAAUGAUUCUCAUUGUACACUAUGAGAAUUUUCCGAAAUACUAUGUCCUGCUACAUGGUUGCUGAAUACAUUCAAGGGCAUUGCACUGUCUUUUGAUGAAGCUCCAAAUCAAAUUCACAUCUUAAUGCAAUCAAUUAUCAGGUAAUCAUGUAGUUCCUUGGCAAGAUCACAUUGGUAGGUAAGUUAAGGUUUGCAACUGUGGUUGAUGUCAGCAGGUCUUGCUAUUUUUCUUUUAAUUUAGUUUCAGUCCUCUAAUGUUUUUAUCUUGCACCUGUCACUUGCUAAAAUUUUAUUCAGUUUAUAUCCCUUUAGAAUUUUCAAACUUAAUGUGCCUUUCAGUUUUUUAGGCAGAAAUACUAAGUUGUAUUUAUAUAACAAAAUUUGAUGGAAACCAUCAUUAUGGUGAUUUCGCAUAGUGCACUAUGAACAUGUCAGCAUGUGAUUUCAGGAAAGUCAGUUGAUGUGUUUUCCUCAGAGAAAUAUUCCUGUUCUCAAGUCUUUCAUACCAACAUGUAGUGGUCAUUCUCUCAUUUGAGAGAAUCCAUUAUAUACCACUGACUUUGUCACACGUCUACGAUUUGCCACUGACUUUAUCAUGUUCUACAAUAUGCCAUCGACUUUUGGAUCUAUAAUCAAACAGUACAUUUUCAUCGUUACCUGAAGAUCAUCUGUUACAGCUAUUAUCCCCCAACAAUAAAGAACAUGCGGUUGUUUGCGAUGCUAUGUUAGGUGCAAUUUUUUAGUGUCUUUAAUUAAAAAAGAAUGAGUUUACGUGUGUACUGUGUUCAUCACAUAAAUGGUUUCUCAAAUUAAUAUCUGCACUUGGCCUCUUUGCAUACCAAACUUUAUAUUUCUCUAUAAGUACUCCAGUAGUCUACAAACUUUUGUUAUCUUGGAUUAACUUAUUUUGUUUCGAUAUGCAAGUCAUAUAAUUAAUCUUCUUGUAGCAGUGAAAUGGUCCAACCCCUUCCUCUUUUGAUAUGGGUUUUCAGCUGCUACUUUUCUUCUUUUUGCAGGAAUUUUAUUUGCAAAUUAAGCACUCAAUUCACUUCCCUCAAAUUGAUUCACAAACUUACACCCGCGCUUUUAAAUCUGUGCAGUUCAUUCAUCUAUGCAAACAUAAAUUAUUUAAUGUUAUAAUUUACUACUGUUAUUCUCUGUCCCAUGUUAAACCAAAAACCAUGUCUACCAUUGAAGCAAUUACUGUAACAAGUUCAUUUUGCCAGCUGAAUCUACCCAGCCACUUUUGCUGUAGCUCCAACCAAAAUAAGGUGGCUUUAUGGUCUCUGUGUGCCAUACAACUUUUAUAUAUUAAUUUAAAUUUAGUUUUACAUGGUCUGAACUUGGCCUUGCAUUGCUUAAGAACUUGGUUGACAACAGUCUGAAAUUGGCGUUGCAUUAUAUGCCAACCUGUGUAGUGUAAUGUAUUGUUUCUAUUCAGAACAUAAACAUGCAUAUUUUCCCUGUGAACCAUUGAUUAUGUACUGAGUUAAUUCCUGACAGCCUUUUGAAACGUGGAGUGUUUUUUUUAGGUUUUGUUGUUGUUUGAUUGCCAAAUGUUUAUAAUUUCAGUACAAAUUUCCUGGGAGCAAAAAAUUGCCAAUCACAUCUCAUGUUAUGUGCUCAAAAGAAACAAAACAAUAGAUGUCUGAACGUGCCUCUCAUUUUCUUUAUUUGGAGUCUUAUUUUCUGCCGUGCUGAUGACAAAUUCUUUAUAUAUACCUCUCAUUUUCUGUAUUUGGAGUCUUAUCUUGUCCUUGCAAUAUGUGUGAAAAAUAGAUGUCUGAACAUCUGCCAGAUUAGUGUUUGAACAUUUCUUAUAUUAUUUUCUGAGCAUUUGACAUAUUAGUUUAUGACUUGUUCUUAUGAUGUACGAGUAUCUGAAUUUAGAAUCUGAACUUGGGCAAGCAUCUAAAUGUUGUUCAAUGUUUUAGUUUGCUGUGAGCUAAUUAAUGUUAUGAAUUUCUUAUAGCUCAAGUAUUGGAAGUUUACAAAUUCACCGGUCGAUGUAAGGUUUUUCUGGGUUUAGUGUAAACAAUAUACUCAUAUUACCAUUCAAGGUUAUCUGAACGUGAAUAUGUAAUGUAUCUGAAUUCAGUGUGCGGACAUACUCUUGCCAUGUUUCUUAAGUCAGUGUAUGAAUAUGCUCUUGCAAGCACUAUUUUUCCCUGUAUUUUUAUUGUUAAAAUAUAUAUUAUAAAAACGUGCUAUGCACGUGCACUAUUACUAGUUAGAGAAGACGACCACAAUCCGUGGCGACGACGUUGUCGCCGCCGGCGCCGAUGCGGCAUGGACAGAGCAGCGACAUUGAAAUCUUCUCUCCUGGAGGGAGGAAGUGCGGCGACGGUGGCGCGAAGUGGUGCUGCGAUCGCAAGUACGAGCUUGUCAGCUACGAGCCUACGACGCGCUCCCGGCCUUCCUCAAGCACAACGAGUUCAUCAUCGACUACUACCGCAGCGAGUGGCCCAUCAAGCAGGCGCUCCUCAGCGCCUUAGUCGUCCACAACGAGACCAUCUUCCAGACGUAAUUAAGCACUCGAUCGAUCAAAAGCACGUAUAUUAGCUAAAGACGAUACUCUACCAGUAGAGAAACUAUCUUUUAUCGGUCGACCAAAUUCCAUAAUAGUUCUUGUUGCAAUAAAAACCAGGACUAAAAAACAUCUUUAGUCCCGAUUCAAAAGGUUAGAGCUACUUUUUAAUCUUUAAUCCUAGUUCAAAAAAGGUAGGCGGUGUCAGACCCCUCCUUUACCUUUAAUCCCGGUUGGACUAAAGAGCUAUUUCUAGUUCCGGUUGUUAAACAACCAGGAAAAAAAAGAUCCGCAUGCGCGGAGAGGAUGAGGCGUGCGCGCAACAUCGAGGAGGAGGAGGAGGCGCACGGGAUAAGUUAAUAAGUUCUAUCUCCUCCUCCCUCACCUUUAUCUCCUCUCCUCACUCACCCCAUCUCUUCCUCUUCCUCCUCUGGAUCCGCCCCCCUCCCCUCUCCUCCCCACUUCUCAGGAAGCGGAGGCGGCCUCGCGCAGUGGCGGCGGCCUCGUGUGGAGGACCGCGCCCGGUGGCGGCUUGCGCGGAAGGCCACGCGGCGGCAGGCGGUGGAGGCUGGCGCGGCUGCACGGAUUUUUUUUUUCUUUUUUCUUUCUUUGUGUUGAAUGAUUCGAUCUGUGUUGUCUGUGUUGAAUGUAUGAUUCGAUCUGUGUUGAGAAUGAACUAUGUUGUUAUGAAUGUUGUUGUGAAUGAUUUGGGAGGAACUAUGUUGUUGUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.76%
ME_num:
MEP:
79.07%
HE_num:
HEP:
10.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.63
Avg Expression:
6.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.45858622124654 | 0.00389189341646245 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.01383805170912 | 2.12707624911507e-07 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.17888008803449 | 1.45864331832477e-12 |
4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.37749850590202 | 2.38541658875144e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.40793937213929 | 3.69934074427738e-15 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.01423127249231 | 6.84666927322822e-11 |
7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.94020583585575 | 1.84944851274089e-09 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.07595892477657 | 1.93776972572582e-08 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.46338797620491 | 2.62914309459468e-21 |