OSA-LNC107280210


Function Link


Basic Info

Chr:

Chr3

Start:

18166526

End:

18171730

Strand:

-

Ref_name:

LOC107280210

Sequence
(XR_001544073.2):

CGCCCUCCCCACGCCACCGCUCGCCCUCCCCAAGCCGUGUCUCCGCCGCCCGCCCGCCUCACCAGCCACGUCGCCGCGCCGCCCGCCUCACCCGCCGCACUCCCCUCUCCCCUCUCCCCUCUCGUCGUCCCACUCAACUCACCGCAGUCCCCUCUCCCCUCUCCCUCGCGUCGCCUGCCUCCCCUCACCGCUGCCUCAGGAUCUCCUCCGCGCCGCCUCCUCGCUCCUGUAACGCCGCUGCGCGUGACCUCUCGCCGAAGAUCGCGUACUCCUGCCGCUGCCGGCGCUGCGAACAUCCUCCCCGUCGACCUCCGCGCCCCGGUCGCCCUCACUUGCAACACCCGCCCCUGCUGUUGUUGCCGCUGUCACUGUAGACGUCUUUGCUCCCUGGUGGCGUCGUCGAGCCCUGACGCCACCCGCAACAGACGACGCCACUGGCAACACAGCUGCCGUGGCCGGCAACGUAGCUGCUGCUGGAACCGCUCGCUUCCUUGAGACGCUCAUCGAGAGAGCCGACUGCCGGUGCGGCACUUCGACAUUAUGCUCUACCACAACGCUACAGAGUACCGAUCAGGAAUGCCCGUUUAUUGAAAAGCUAUGGUAUGUUAGCUACAUUUUAAACGAACAGGAUAUGAUUAUCUGAGCUUUGUCCAGCUCCAGUAUCUGAAGAUGGGAUGUUCAGUUUGUAAUCAUAGAACUCACGCGCAACAAUCUUGCAGUGGAAUCCAAUGAUUCACAGAAUACUGCAACGGUUUGAUCAGCGAUAAGCAGGUGAUAAAUGUUGGUGAUUGACUUAUGCCCAGGUUACCCACCUUGAUUUUGUGCCUACCUUGAAACAUGAAGCCUCGCUAUGAUUGUUCACCAUUCCAGCUUACCAGCUAUAUUGAAAUAUCAAUCUAUUCUGUCUUCCAGAUUACACAUAGUUCAUUAUGCUUGGGACAUAAUAAUACAGUAGUUGAUAUAAAUGUGCAGAAAAAACUGAAAGAAAUUUCGGACUGCUUAAUAUUUUGAUGUGAGUGGAUCACUGGUGCAUAUUGGAGUGACUGAACAAUGAUUCUCAUUGUACACUAUGAGAAUUUUCCGAAAUACUAUGUCCUGCUACAUGGUUGCUGAAUACAUUCAAGGGCAUUGCACUGUCUUUUGAUGAAGCUCCAAAUCAAAUUCACAUCUUAAUGCAAUCAAUUAUCAGGUAAUCAUGUAGUUCCUUGGCAAGAUCACAUUGGUAGGUAAGUUAAGGUUUGCAACUGUGGUUGAUGUCAGCAGGUCUUGCUAUUUUUCUUUUAAUUUAGUUUCAGUCCUCUAAUGUUUUUAUCUUGCACCUGUCACUUGCUAAAAUUUUAUUCAGUUUAUAUCCCUUUAGAAUUUUCAAACUUAAUGUGCCUUUCAGUUUUUUAGGCAGAAAUACUAAGUUGUAUUUAUAUAACAAAAUUUGAUGGAAACCAUCAUUAUGGUGAUUUCGCAUAGUGCACUAUGAACAUGUCAGCAUGUGAUUUCAGGAAAGUCAGUUGAUGUGUUUUCCUCAGAGAAAUAUUCCUGUUCUCAAGUCUUUCAUACCAACAUGUAGUGGUCAUUCUCUCAUUUGAGAGAAUCCAUUAUAUACCACUGACUUUGUCACACGUCUACGAUUUGCCACUGACUUUAUCAUGUUCUACAAUAUGCCAUCGACUUUUGGAUCUAUAAUCAAACAGUACAUUUUCAUCGUUACCUGAAGAUCAUCUGUUACAGCUAUUAUCCCCCAACAAUAAAGAACAUGCGGUUGUUUGCGAUGCUAUGUUAGGUGCAAUUUUUUAGUGUCUUUAAUUAAAAAAGAAUGAGUUUACGUGUGUACUGUGUUCAUCACAUAAAUGGUUUCUCAAAUUAAUAUCUGCACUUGGCCUCUUUGCAUACCAAACUUUAUAUUUCUCUAUAAGUACUCCAGUAGUCUACAAACUUUUGUUAUCUUGGAUUAACUUAUUUUGUUUCGAUAUGCAAGUCAUAUAAUUAAUCUUCUUGUAGCAGUGAAAUGGUCCAACCCCUUCCUCUUUUGAUAUGGGUUUUCAGCUGCUACUUUUCUUCUUUUUGCAGGAAUUUUAUUUGCAAAUUAAGCACUCAAUUCACUUCCCUCAAAUUGAUUCACAAACUUACACCCGCGCUUUUAAAUCUGUGCAGUUCAUUCAUCUAUGCAAACAUAAAUUAUUUAAUGUUAUAAUUUACUACUGUUAUUCUCUGUCCCAUGUUAAACCAAAAACCAUGUCUACCAUUGAAGCAAUUACUGUAACAAGUUCAUUUUGCCAGCUGAAUCUACCCAGCCACUUUUGCUGUAGCUCCAACCAAAAUAAGGUGGCUUUAUGGUCUCUGUGUGCCAUACAACUUUUAUAUAUUAAUUUAAAUUUAGUUUUACAUGGUCUGAACUUGGCCUUGCAUUGCUUAAGAACUUGGUUGACAACAGUCUGAAAUUGGCGUUGCAUUAUAUGCCAACCUGUGUAGUGUAAUGUAUUGUUUCUAUUCAGAACAUAAACAUGCAUAUUUUCCCUGUGAACCAUUGAUUAUGUACUGAGUUAAUUCCUGACAGCCUUUUGAAACGUGGAGUGUUUUUUUUAGGUUUUGUUGUUGUUUGAUUGCCAAAUGUUUAUAAUUUCAGUACAAAUUUCCUGGGAGCAAAAAAUUGCCAAUCACAUCUCAUGUUAUGUGCUCAAAAGAAACAAAACAAUAGAUGUCUGAACGUGCCUCUCAUUUUCUUUAUUUGGAGUCUUAUUUUCUGCCGUGCUGAUGACAAAUUCUUUAUAUAUACCUCUCAUUUUCUGUAUUUGGAGUCUUAUCUUGUCCUUGCAAUAUGUGUGAAAAAUAGAUGUCUGAACAUCUGCCAGAUUAGUGUUUGAACAUUUCUUAUAUUAUUUUCUGAGCAUUUGACAUAUUAGUUUAUGACUUGUUCUUAUGAUGUACGAGUAUCUGAAUUUAGAAUCUGAACUUGGGCAAGCAUCUAAAUGUUGUUCAAUGUUUUAGUUUGCUGUGAGCUAAUUAAUGUUAUGAAUUUCUUAUAGCUCAAGUAUUGGAAGUUUACAAAUUCACCGGUCGAUGUAAGGUUUUUCUGGGUUUAGUGUAAACAAUAUACUCAUAUUACCAUUCAAGGUUAUCUGAACGUGAAUAUGUAAUGUAUCUGAAUUCAGUGUGCGGACAUACUCUUGCCAUGUUUCUUAAGUCAGUGUAUGAAUAUGCUCUUGCAAGCACUAUUUUUCCCUGUAUUUUUAUUGUUAAAAUAUAUAUUAUAAAAACGUGCUAUGCACGUGCACUAUUACUAGUUAGAGAAGACGACCACAAUCCGUGGCGACGACGUUGUCGCCGCCGGCGCCGAUGCGGCAUGGACAGAGCAGCGACAUUGAAAUCUUCUCUCCUGGAGGGAGGAAGUGCGGCGACGGUGGCGCGAAGUGGUGCUGCGAUCGCAAGUACGAGCUUGUCAGCUACGAGCCUACGACGCGCUCCCGGCCUUCCUCAAGCACAACGAGUUCAUCAUCGACUACUACCGCAGCGAGUGGCCCAUCAAGCAGGCGCUCCUCAGCGCCUUAGUCGUCCACAACGAGACCAUCUUCCAGACGUAAUUAAGCACUCGAUCGAUCAAAAGCACGUAUAUUAGCUAAAGACGAUACUCUACCAGUAGAGAAACUAUCUUUUAUCGGUCGACCAAAUUCCAUAAUAGUUCUUGUUGCAAUAAAAACCAGGACUAAAAAACAUCUUUAGUCCCGAUUCAAAAGGUUAGAGCUACUUUUUAAUCUUUAAUCCUAGUUCAAAAAAGGUAGGCGGUGUCAGACCCCUCCUUUACCUUUAAUCCCGGUUGGACUAAAGAGCUAUUUCUAGUUCCGGUUGUUAAACAACCAGGAAAAAAAAGAUCCGCAUGCGCGGAGAGGAUGAGGCGUGCGCGCAACAUCGAGGAGGAGGAGGAGGCGCACGGGAUAAGUUAAUAAGUUCUAUCUCCUCCUCCCUCACCUUUAUCUCCUCUCCUCACUCACCCCAUCUCUUCCUCUUCCUCCUCUGGAUCCGCCCCCCUCCCCUCUCCUCCCCACUUCUCAGGAAGCGGAGGCGGCCUCGCGCAGUGGCGGCGGCCUCGUGUGGAGGACCGCGCCCGGUGGCGGCUUGCGCGGAAGGCCACGCGGCGGCAGGCGGUGGAGGCUGGCGCGGCUGCACGGAUUUUUUUUUUCUUUUUUCUUUCUUUGUGUUGAAUGAUUCGAUCUGUGUUGUCUGUGUUGAAUGUAUGAUUCGAUCUGUGUUGAGAAUGAACUAUGUUGUUAUGAAUGUUGUUGUGAAUGAUUUGGGAGGAACUAUGUUGUUGUGAA

Sequence
(XR_003241463.1):

CCUCCCCACGCCACCGCUCGCCCUCCCCAAGCCGUGUCUCCGCCGCCCGCCCGCCUCACCAGCCACGUCGCCGCGCCGCCCGCCUCACCCGCCGCACUCCCCUCUCCCCUCUCCCCUCUCGUCGUCCCACUCAACUCACCGCAGUCCCCUCUCCCCUCUCCCUCGCGUCGCCUGCCUCCCCUCACCGCUGCCUCAGGAUCUCCUCCGCGCCGCCUCCUCGCUCCUGUAACGCCGCUGCGCGUGACCUCUCGCCGAAGAUCGCGUACUCCUGCCGCUGCCGGCGCUGCGAACAUCCUCCGUAAGCUCCAUCACCCCUGUCAUCCUCGCUGGUCGCCAUGCCCAAUUCAAUCGCGUAUCCAAUACAAUCCCUAAUUUCACAUCGCACCAUGUCCCAAUCGUCGUUCCCAUCGCCAUUCCGCUCCUCCGAUGCAGCCGUCGACCUCCGCGCCCCGGUCGCCCUCACUUGCAACACCCGCCCCUGCUGUUGUUGCCGCUGUCACUGUAGACGUCUUUGCUCCCUGGUGGCGUCGUCGAGCCCUGACGCCACCCGCAACAGACGACGCCACUGGCAACACAGCUGCCGUGGCCGGCAACGUAGCUGCUGCUGGAACCGCUCGCUUCCUUGAGACGCUCAUCGAGAGAGCCGACUGCCGGUGCGGCACUUCGACAUUAUGCUCUACCACAACGCUACAGAGUACCGAUCAGGAAUGCCCGUUUAUUGAAAAGCUAUGGUAUGUUAGCUACAUUUUAAACGAACAGGAUAUGAUUAUCUGAGCUUUGUCCAGCUCCAGUAUCUGAAGAUGGGAUGUUCAGUUUGUAAUCAUAGAACUCACGCGCAACAAUCUUGCAGUGGAAUCCAAUGAUUCACAGAAUACUGCAACGGUUUGAUCAGCGAUAAGCAGGUGAUAAAUGUUGGUGAUUGACUUAUGCCCAGGUUACCCACCUUGAUUUUGUGCCUACCUUGAAACAUGAAGCCUCGCUAUGAUUGUUCACCAUUCCAGCUUACCAGCUAUAUUGAAAUAUCAAUCUAUUCUGUCUUCCAGAUUACACAUAGUUCAUUAUGCUUGGGACAUAAUAAUACAGUAGUUGAUAUAAAUGUGCAGAAAAAACUGAAAGAAAUUUCGGACUGCUUAAUAUUUUGAUGUGAGUGGAUCACUGGUGCAUAUUGGAGUGACUGAACAAUGAUUCUCAUUGUACACUAUGAGAAUUUUCCGAAAUACUAUGUCCUGCUACAUGGUUGCUGAAUACAUUCAAGGGCAUUGCACUGUCUUUUGAUGAAGCUCCAAAUCAAAUUCACAUCUUAAUGCAAUCAAUUAUCAGGUAAUCAUGUAGUUCCUUGGCAAGAUCACAUUGGUAGGUAAGUUAAGGUUUGCAACUGUGGUUGAUGUCAGCAGGUCUUGCUAUUUUUCUUUUAAUUUAGUUUCAGUCCUCUAAUGUUUUUAUCUUGCACCUGUCACUUGCUAAAAUUUUAUUCAGUUUAUAUCCCUUUAGAAUUUUCAAACUUAAUGUGCCUUUCAGUUUUUUAGGCAGAAAUACUAAGUUGUAUUUAUAUAACAAAAUUUGAUGGAAACCAUCAUUAUGGUGAUUUCGCAUAGUGCACUAUGAACAUGUCAGCAUGUGAUUUCAGGAAAGUCAGUUGAUGUGUUUUCCUCAGAGAAAUAUUCCUGUUCUCAAGUCUUUCAUACCAACAUGUAGUGGUCAUUCUCUCAUUUGAGAGAAUCCAUUAUAUACCACUGACUUUGUCACACGUCUACGAUUUGCCACUGACUUUAUCAUGUUCUACAAUAUGCCAUCGACUUUUGGAUCUAUAAUCAAACAGUACAUUUUCAUCGUUACCUGAAGAUCAUCUGUUACAGCUAUUAUCCCCCAACAAUAAAGAACAUGCGGUUGUUUGCGAUGCUAUGUUAGGUGCAAUUUUUUAGUGUCUUUAAUUAAAAAAGAAUGAGUUUACGUGUGUACUGUGUUCAUCACAUAAAUGGUUUCUCAAAUUAAUAUCUGCACUUGGCCUCUUUGCAUACCAAACUUUAUAUUUCUCUAUAAGUACUCCAGUAGUCUACAAACUUUUGUUAUCUUGGAUUAACUUAUUUUGUUUCGAUAUGCAAGUCAUAUAAUUAAUCUUCUUGUAGCAGUGAAAUGGUCCAACCCCUUCCUCUUUUGAUAUGGGUUUUCAGCUGCUACUUUUCUUCUUUUUGCAGGAAUUUUAUUUGCAAAUUAAGCACUCAAUUCACUUCCCUCAAAUUGAUUCACAAACUUACACCCGCGCUUUUAAAUCUGUGCAGUUCAUUCAUCUAUGCAAACAUAAAUUAUUUAAUGUUAUAAUUUACUACUGUUAUUCUCUGUCCCAUGUUAAACCAAAAACCAUGUCUACCAUUGAAGCAAUUACUGUAACAAGUUCAUUUUGCCAGCUGAAUCUACCCAGCCACUUUUGCUGUAGCUCCAACCAAAAUAAGGUGGCUUUAUGGUCUCUGUGUGCCAUACAACUUUUAUAUAUUAAUUUAAAUUUAGUUUUACAUGGUCUGAACUUGGCCUUGCAUUGCUUAAGAACUUGGUUGACAACAGUCUGAAAUUGGCGUUGCAUUAUAUGCCAACCUGUGUAGUGUAAUGUAUUGUUUCUAUUCAGAACAUAAACAUGCAUAUUUUCCCUGUGAACCAUUGAUUAUGUACUGAGUUAAUUCCUGACAGCCUUUUGAAACGUGGAGUGUUUUUUUUAGGUUUUGUUGUUGUUUGAUUGCCAAAUGUUUAUAAUUUCAGUACAAAUUUCCUGGGAGCAAAAAAUUGCCAAUCACAUCUCAUGUUAUGUGCUCAAAAGAAACAAAACAAUAGAUGUCUGAACGUGCCUCUCAUUUUCUUUAUUUGGAGUCUUAUUUUCUGCCGUGCUGAUGACAAAUUCUUUAUAUAUACCUCUCAUUUUCUGUAUUUGGAGUCUUAUCUUGUCCUUGCAAUAUGUGUGAAAAAUAGAUGUCUGAACAUCUGCCAGAUUAGUGUUUGAACAUUUCUUAUAUUAUUUUCUGAGCAUUUGACAUAUUAGUUUAUGACUUGUUCUUAUGAUGUACGAGUAUCUGAAUUUAGAAUCUGAACUUGGGCAAGCAUCUAAAUGUUGUUCAAUGUUUUAGUUUGCUGUGAGCUAAUUAAUGUUAUGAAUUUCUUAUAGCUCAAGUAUUGGAAGUUUACAAAUUCACCGGUCGAUGUAAGGUUUUUCUGGGUUUAGUGUAAACAAUAUACUCAUAUUACCAUUCAAGGUUAUCUGAACGUGAAUAUGUAAUGUAUCUGAAUUCAGUGUGCGGACAUACUCUUGCCAUGUUUCUUAAGUCAGUGUAUGAAUAUGCUCUUGCAAGCACUAUUUUUCCCUGUAUUUUUAUUGUUAAAAUAUAUAUUAUAAAAACGUGCUAUGCACGUGCACUAUUACUAGUUAGAGAAGACGACCACAAUCCGUGGCGACGACGUUGUCGCCGCCGGCGCCGAUGCGGCAUGGACAGAGCAGCGACAUUGAAAUCUUCUCUCCUGGAGGGAGGAAGUGCGGCGACGGUGGCGCGAAGUGGUGCUGCGAUCGCAAGUACGAGCUUGUCAGCUACGAGCCUACGACGCGCUCCCGGCCUUCCUCAAGCACAACGAGUUCAUCAUCGACUACUACCGCAGCGAGUGGCCCAUCAAGCAGGCGCUCCUCAGCGCCUUAGUCGUCCACAACGAGACCAUCUUCCAGACGUAAUUAAGCACUCGAUCGAUCAAAAGCACGUAUAUUAGCUAAAGACGAUACUCUACCAGUAGAGAAACUAUCUUUUAUCGGUCGACCAAAUUCCAUAAUAGUUCUUGUUGCAAUAAAAACCAGGACUAAAAAACAUCUUUAGUCCCGAUUCAAAAGGUUAGAGCUACUUUUUAAUCUUUAAUCCUAGUUCAAAAAAGGUAGGCGGUGUCAGACCCCUCCUUUACCUUUAAUCCCGGUUGGACUAAAGAGCUAUUUCUAGUUCCGGUUGUUAAACAACCAGGAAAAAAAAGAUCCGCAUGCGCGGAGAGGAUGAGGCGUGCGCGCAACAUCGAGGAGGAGGAGGAGGCGCACGGGAUAAGUUAAUAAGUUCUAUCUCCUCCUCCCUCACCUUUAUCUCCUCUCCUCACUCACCCCAUCUCUUCCUCUUCCUCCUCUGGAUCCGCCCCCCUCCCCUCUCCUCCCCACUUCUCAGGAAGCGGAGGCGGCCUCGCGCAGUGGCGGCGGCCUCGUGUGGAGGACCGCGCCCGGUGGCGGCUUGCGCGGAAGGCCACGCGGCGGCAGGCGGUGGAGGCUGGCGCGGCUGCACGGAUUUUUUUUUUCUUUUUUCUUUCUUUGUGUUGAAUGAUUCGAUCUGUGUUGUCUGUGUUGAAUGUAUGAUUCGAUCUGUGUUGAGAAUGAACUAUGUUGUUAUGAAUGUUGUUGUGAAUGAUUUGGGAGGAACUAUGUUGUUGUGAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

48

LEP:

9.76%

ME_num:

389

MEP:

79.07%

HE_num:

54

HEP:

10.98%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.63

Avg Expression:

6.75

Tip: OSA-LNC107280210 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h-1.458586221246540.00389189341646245
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.013838051709122.12707624911507e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.178880088034491.45864331832477e-12
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.377498505902022.38541658875144e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.407939372139293.69934074427738e-15
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.014231272492316.84666927322822e-11
7Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.940205835855751.84944851274089e-09
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.075958924776571.93776972572582e-08
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.463387976204912.62914309459468e-21