Chr:
Chr3
Start:
24470376
End:
24473489
Strand:
+
Ref_name:
LOC107280203
Sequence
(XR_001544023.2):
UCAACCUUGGGUAAUAAAUCAACUAGCUUGUGUUACUUAUGUUGACCUAGCUACAACUACAUGCUUAGCCAUGCUUAAUUACCACUAGCUCAAUUGAUGGGAUAAUUACAGUAUUAGACCUCUUAGUAUCCAGACGAGCUGCGUGAUCGGAACAUCCGGCCAUGUUUCUUUGGUCAUAAUUAUCCUACUAAAAUGCAACAUAAUGGUGGGCUGUGGGUGCAUGGUUUUGCUAGUCGCACCCAUGGUAGGACCGGUUCGCGGGAAACCCUGGAAGACAUACCACGCUUGCCACAAGCGGGAAUGGGUAAACUACUUGAUCUGUAGUAUAGCUUUCCUCUAGCUGACAUUUCCAAGCUAGGGUGGGUGUGAUGGAGUAUGGAUGGGCCCUACGACAGCCUUUGCUGCUUCCGAAUUCACCGUGGCAUGAGGGGGGGCUGCCCGCUGCCUGCUGGGGGCGGAGGUGAAACCUGCGGUGUGAUGUGAUUGGUCAGAUGGGGUUAUAUGAAGGAUCUUGUCACAAUCACUCGACAUGGUGACAUGUCAUGCAUGGCACGGUGACAUGAGUGGAUUGUGUCUUAUGGGUACAGUUGUGCACCUCUAGCUAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGAUCGACCAGAUUCACCGUGAUUAGUCUCACCCUAAUAAAUCGACCCAAUGCACUGUGUAGUUCAGGUGGGAUGGUUGGGCCUGUUCAACGUGGCAUAGCGUUGAUCAGUGAAGAUCGAAUAUUACCUUAAUUAAUCAAUUGUUUUACUAUUUUCCAACUGUAAAUGCUUUACAACCACCUUUAUGCAAAUAGCCACAAACCUUCCUUGAGUCCCCUUGCGCGCCUGCAUCAAUGGUGUGGCUUGUUAAGUACGGUGGUUAUACUUAGCCUUGAUGUUAUUCCUCAUUUUCAAAAGUGUAGUACUUCUGAGCUGAAGACGAAGUUAGAGGACCAAGGCACAUACCCAGUUGAGUUUUGCCUGUGGAGUAGAGCUGAAGCCCCGCUAGGAUCGCCUUUUUCGCUUCUAUCGUUCUCUUUCGAUCAUCAGGUCGGUUUUAAGGAAGAGGAGAGACCGGAUCACUCUUUGUGGUCACCAUGCACCUAGAUAGUUGCGCCAUAUGAGUACUCGGCUUCUGAAGAAGGGAGCAAAUGAGUAGCAAGCGAAACAAUCAAAUGUGGCAUCGAUGUUCUUUGUUGUGCGUCUAUAUCGGGUACAUUUGUUUCAUUGGAUAUUAAUACUAUUUGCUAAAUAACUGAUGAUAUUACAUGACGAAAGUUUGUUGCAUUUAUUUUCAUGUAGGCACUUCUAUGUGCAAGACCAUGCACUACACGAUAAGCACCAUAUGGAAAAACUGAGGACGGUUUUCUAUGAAGAAGAGGAGGAUGAUGUGACCUGGCUACCAUAGGUAUAACAAUUGUUCACUUCAGGGAUCAAGAAGAAUACAUCAAGAUCAAGCCGUCCAAGUGAUGGAAUCAAAUUCGGCUACCUGCUACCGUGCUGACUUCAAACGACUGUCAAAUAUGUAUACAAGCUCUGUUUUGGUUCUGUGAGUAUUUGAUGGAUAGCUCUUAUCGGAGUCCUCUUUCCAACGGAUCUAGCCUCAUCGCCAAAUUCCAUCUCAGUCAUCCGCAAUCAAAGAAACAUGGUGCUAAAAUACCUGUCGUGGGCCUUUGGAUUUGUAACUUCAUUUAGGACCCCGGCCCAUGUGGGGUGAGCCCCAUCCUGGUGGAGCACGACCCUAGGGACCCUUUGGUCGUCCCCUCAUCUCCUUAAAUAGCCAUGUAUCCCUUCAGAGUGUCUAGAGUUUGUUUAGAUUAAAGUUUA
Sequence
(XR_003241466.1):
UACUAACCAUUUGCUGGAAGUGCAUAAUCAUGAAAAGGAGGAGAGAGACAUGAUUGAACCAUCAUUCCCUUUAUUCACACUCAAAUUCGAUGCACCUCCAUCAUCUGAAGAAAUCACCAAAGCAUCAGGUCGGUUUUAAGGAAGAGGAGAGACCGGAUCACUCUUUGUGGUCACCAUGCACCUAGAUAGUUGCGCCAUAUGAGUACUCGGCUUCUGAAGAAGGGAGCAAAUGAGUAGCAAGCGAAACAAUCAAAUGUGGCAUCGAUGUUCUUUGUUGUGCGUCUAUAUCGGGUACAUUUGUUUCAUUGGAUAUUAAUACUAUUUGCUAAAUAACUGAUGAUAUUACAUGACGAAAGUUUGUUGCAUUUAUUUUCAUGUAGGCACUUCUAUGUGCAAGACCAUGCACUACACGAUAAGCACCAUAUGGAAAAACUGAGGACGGUUUUCUAUGAAGAAGAGGAGGAUGAUGUGACCUGGCUACCAUAGGUAUAACAAUUGUUCACUUCAGGGAUCAAGAAGAAUACAUCAAGAUCAAGCCGUCCAAGUGAUGGAAUCAAAUUCGGCUACCUGCUACCGUGCUGACUUCAAACGACUGUCAAAUAUGUAUACAAGCUCUGUUUUGGUUCUGUGAGUAUUUGAUGGAUAGCUCUUAUCGGAGUCCUCUUUCCAACGGAUCUAGCCUCAUCGCCAAAUUCCAUCUCAGUCAUCCGCAAUCAAAGAAACAUGGUGCUAAAAUACCUGUCGUGGGCCUUUGGAUUUGUAACUUCAUUUAGGACCCCGGCCCAUGUGGGGUGAGCCCCAUCCUGGUGGAGCACGACCCUAGGGACCCUUUGGUCGUCCCCUCAUCUCCUUAAAUAGCCAUGUAUCCCUUCAGAGUGUCUAGAGUUUGUUUAGAUUAAAGUUUA
Sequence
(XR_003241467.1):
UUUGUCAACCUUGGGUAAUAAAUCAACUAGCUUGUGUUACUUAUGUUGACCUAGCUACAACUACAUGCUUAGCCAUGCUUAAUUACCACUAGCUCAAUUGAUGGGAUAAUUACAGUAUUAGACCUCUUAGUAUCCAGACGAGCUGCGUGAUCGGAACAUCCGGCCAUGUUUCUUUGGUCAUAAUUAUCCUACUAAAAUGCAACAUAAUGGUGGGCUGUGGGUGCAUGGUUUUGCUAGUCGCACCCAUGGUAGGACCGGUUCGCGGGAAACCCUGGAAGACAUACCACGCUUGCCACAAGCGGGAAUGGGUAAACUACUUGAUCUGUAGUAUAGCUUUCCUCUAGCUGACAUUUCCAAGCUAGGGUGGGUGUGAUGGAGUAUGGAUGGGCCCUACGACAGCCUUUGCUGCUUCCGAAUUCACCGUGGCAUGAGGGGGGGCUGCCCGCUGCCUGCUGGGGGCGGAGGUGAAACCUGCGGUGUGAUGUGAUUGGUCAGAUGGGGUUAUAUGAAGGAUCUUGUCACAAUCACUCGACAUGGUGACAUGUCAUGCAUGGCACGGUGACAUGAGUGGAUUGUGUCUUAUGGGUACAGUUGUGCACCUCUAGCUAGAGUAAAACUAUUCGAAUAGCCGUGCCCGCGGUUAUGGGCGAUCGACCAGAUUCACCGUGAUUAGUCUCACCCUAAUAAAUCGACCCAAUGCACUGUGUAGUUCAGGUGGGAUGGUUGGGCCUGUUCAACGUGGCAUAGCGUUGAUCAGUGAAGAUCGAAUAUUACCUUAAUUAAUCAAUUGUUUUACUAUUUUCCAACUGUAAAUGCUUUACAACCACCUUUAUGCAAAUAGCCACAAACCUUCCUUGAGUCCCCUUGCGCGCCUGCAUCAAUGGUGUGGCUUGUUAAGUACGGUGGUUAUACUUAGCCUUGAUGUUAUUCCUCAUUUUCAAAAGUGUAGUACUUCUGAGCUGAAGACGAAGUUAGAGGACCAAGGCACAUACCCAGUUGAGUUUUGCCUGUGGAGUAGAGCUGAAGCCCCGCUAGGAUCGCCUUUUUCGCUUCUAUCGUUCUCUUUCGAUGUCGGUUUUAAGGAAGAGGAGAGACCGGAUCACUCUUUGUGGUCACCAUGCACCUAGAUAGUUGCGCCAUAUGAGUACUCGGCUUCUGAAGAAGGGAGCAAAUGAGUAGCAAGCGAAACAAUCAAAUGUGGCAUCGAUGUUCUUUGUUGUGCGUCUAUAUCGGGUACAUUUGUUUCAUUGGAUAUUAAUACUAUUUGCUAAAUAACUGAUGAUAUUACAUGACGAAAGUUUGUUGCAUUUAUUUUCAUGUAGGCACUUCUAUGUGCAAGACCAUGCACUACACGAUAAGCACCAUAUGGAAAAACUGAGGACGGUUUUCUAUGAAGAAGAGGAGGAUGAUGUGACCUGGCUACCAUAGGUAUAACAAUUGUUCACUUCAGGGAUCAAGAAGAAUACAUCAAGAUCAAGCCGUCCAAGUGAUGGAAUCAAAUUCGGCUACCUGCUACCGUGCUGACUUCAAACGACUGUCAAAUAUGUAUACAAGCUCUGUUUUGGUUCUGUGAGUAUUUGAUGGAUAGCUCUUAUCGGAGUCCUCUUUCCAACGGAUCUAGCCUCAUCGCCAAAUUCCAUCUCAGUCAUCCGCAAUCAAAGAAACAUGGUGCUAAAAUACCUGUCGUGGGCCUUUGGAUUUGUAACUUCAUUUAGGACCCCGGCCCAUGUGGGGUGAGCCCCAUCCUGGUGGAGCACGACCCUAGGGACCCUUUGGUCGUCCCCUCAUCUCCUUAAAUAGCCAUGUAUCCCUUCAGAGUGUCUAGAGUUUGUUUAGAUUAAAGUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
34.96%
HE_num:
HEP:
13.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.89
Avg Expression:
14.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.60128723101948 | 0.000311368030475796 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.45221086545062 | 0.00268761659922109 |
| 3 | IR64NIL // root // control--/--IR64NIL // root // Al | 4.52239333297755 | 0.0186862679246278 |
| 4 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.31875291021129 | 7.82297857735576e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.79604793133211 | 0.000115976754942447 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.45479653223978 | 3.04600318730031e-06 |
| 7 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.49132429153737 | 0.027103444002564 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.01654514271987 | 0.000122204754021211 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.70368082748602 | 0.020642848753927 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.37432381570679 | 5.97952178752886e-06 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.96670156130858 | 2.49234548069961e-46 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 5.73506198878111 | 1.94258995948868e-37 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.50368766289723 | 0.000909595905852123 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.53048659500544 | 8.4318218652999e-26 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.57851322042423 | 9.91944297621354e-25 |
| 16 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.61982896012206 | 0.00685083591571757 |
| 17 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 3.29707805597271 | 0.00106098860501771 |
| 18 | 9311 // leaf // control--/--9311 // leaf // salt | 2.11429664374819 | 0.0316688818177192 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.00121055511848 | 3.60459184161247e-05 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.42646554073003 | 7.35895100113644e-27 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.43885692359279 | 2.49946036446469e-13 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.53890512674128 | 2.33058462576375e-08 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.27801455590285 | 1.69301750253547e-06 |
| 24 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 7.27031476990272 | 7.52585032982484e-10 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.89780121944158 | 5.53639884158934e-15 |
| 26 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 7.27024721936171 | 7.49585320240101e-10 |
| 27 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 7.27012954608105 | 7.56120407891447e-10 |
| 28 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 6.21995955777711 | 1.67689715133448e-09 |
| 29 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.67585353909896 | 0.0149267717896453 |
| 30 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.07417921387453 | 2.3971621946045e-28 |
| 31 | 9L136 // leaf // control--/--9L136 // leaf // salt | 4.24927480018884 | 6.02464168145115e-10 |
| 32 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.31169489088729 | 8.6541188320624e-10 |