Chr:
Chr1
Start:
40381017
End:
40384157
Strand:
-
Ref_name:
LOC107280201
Sequence
(XR_001543991.2):
GCCCAGCCCCACUCGUAUGUAGGCCGGCCCUACACUCGGCCUUCCAAAAAAGGCCGACGUGCCUCCACUCUUCUUCUCCACCGAACAGCCCACGAAGCCAAUUAGCCCACUAACCAGUGAAAACCCUAGCCAUUGAAUCGUUUCUCGGUCUCUCAGACUCUCUCCGACUCUCCCUGACUCCCUGCAAGCGGCACGGGCGCGGCGGCGCUGGGCGCUCGAUAGGGCGGCGGCCGCGGGGCAGGGCGGCGCGAGGCGGCGUGCGGCGGCAGGGGCACAGCUGCGCGAGGCGGCGGCGGCGGGGCUACGCGAGGCGGCGUGCGGUACGGCGGUGGGGCGCAGCGGCGCGAGGCGGCAGCGGCGGGGCUACGCGAGGCGGCGUGCGGUGCGGCGGCGCGAGGCGGUGGCGACGGCUUGCGGGUGUGCAGCGCAGCGGCGGGGUCACAGGGGUACGGCUGCGCGAGGCGGCGGCGGCAGGCAGGCGUGCGGGCCGUGCGGCGGCGAUGAACGGCGUGCGGCGUCGGCUUGCGGUUGUGCGGGAGUCAGGGAGUGGAAGGUCAGUAUUUUUUUGUUGUCUUUCUUCUUCCUUUCUCACUUCUCAAAUCUCAAACCUAGCUUUAGUACAUCACAUUACUCGGUUAGAUUUGGUUUGAAUUUGUAGACGAAGAGAAGUAGGACAAAAAAAUCAUUCUAUGCGUCCGAAGAAAAUCAUUCAAAAAGCAUGGUUCAAAAACAUGGCAAGUUUUAGCCUUUAAUUUAGGCCCUAGGCGUCCGAAGAUCCUGGUUCCGCCACUGGUUGGCGGCAAGCCGCCAUGCCAUCGUCAACGCAAUUCCGGCGCCAACCGCUGUUCCGCAGGACCACACGAGGUGCAGGCUGCAGCCGCUGCUUUCUUCUUGCUUCUGCUUGCCACCGUUCAGGCCAUUUCGUGGAGAAGAAAUUGUUGGAUGAAAUUGAUAUUAAUACUAUUAUCAAUGACUUCGCAUCUAGAAAUGGCAGAAGAAAGUUUUAAGGUAAUAUGUACAAUGUUUUCUACCUAAAUAUUAUUUCUAAAUUUUCUAUGAAAAUUACUCGUAUAUAUAAAGCAUACGUUUGUAUUGAUUAUUAUUAUAUAGUAUGUUAAGGGCUCUGCACCGGGACCCUGAAAAGUCAGGACCGGCCCUGCAUACUGUAGGUUGUUAGGCUAUUAAGUGUAAAUUGUCACGGAAACGUAUUUAUUGCGGUUGUGGAAUCAUGCACAAGUGUGCUAAUCAAAAUUUAAAAUGUUGGAAUAAUACAUCCAUAUUUAUGCUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
64.63%
HE_num:
HEP:
15.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.52
Avg Expression:
5.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.44662171712744 | 0.00142948186563804 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.56648556607618 | 0.000200119295993929 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.84529896340162 | 4.86207005734568e-07 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.80334744542246 | 3.51974370229747e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.09400403105496 | 0.000131082720760919 |