Chr:
Chr1
Start:
303330
End:
306444
Strand:
-
Ref_name:
LOC107280189
Sequence
(XR_001543865.2):
ACGUAGGAGGUGCACGACAGGGGCACCAGGCAGAGUCCUCUACUUCGGAGGUCAAGCUUUGCUGCUGCGUCCCCUCCAUUUGACGUCCCCUUCUAAUUGAUUAAUUAAUCAAUUGACACCAAGCAAACAUGACAGGCUAAUUUCUUGCUGUUCUUGGAUGAUCUCAGGUAGAUGUGCAUUGUUACAUACCUCAACUUGGUCCUGAAGAAAUUUGAUGUAACCGAUGGCCUCCAUGAGUACCGAUGCGGUAUCAGUCUGCAUCUCAUCAUUUUAAAAUCAAAUUCUAUCAAAGGGUGAUUAUAUAAUUACAGAAACUGGUAAUGCAUUCAUUGAUUGUUUGUUACAUACCUUACCAAAGGGUGAGACCAGUUGCUGAAGGGCGGCAAUUCUAUCCCCUAGUUUCUCUUUCCUUACCUAUAAUAAUUAGUUGAAUUAGGAUAUGCAUUACCAUUGUCCAAUGUUCAUGCAGAGCAGAUAAAUGAUCAAACAUCGAUCGGUCAGAUCGAUCUUUGUAUGUGUAUAUACGGACCUUGAAUGAAGGAAGCAUUGAGGAGGAGUGUGACUCGAGCCGGGGCUUCUUUGACGAUGGCGGCAGCGCUGUUGAUGAUCUGUGCUCCGUUGAACUCCCAUGGCGGCCACCUCUCCCUUGAGCUGCUGCAUUCGUAUUCCUCUUCAUCUGCAUGUGUAGGGUGUUGGAUGGUCCUUGAAUUAGAUGAGCAGGAGGGCCAGCAUAGGGGCAGGGCACAUGCUCAUCUCUUAUGCUGCUAUGGCCGACCACUGCAGCAGCAGCAGCCUGCCUCUUGCAACAUAUCUGCAGCGGCUCAUCGCCGGCGGCCAGCUUCUGCAGCCGCGAGACGUUGAUGCUCGGGAGCACAGCGCCGUCCAGAUGUAGAUGCGGCGGAGGAAGAAGCGUGGUGGCGCUGCAUGACCUUGGAUUGCUGAUUAGGGAUUGAUCAGGACGUGGCCGUAGCUCCUCCUCGUUCAUCAUCACAUUACUAUUAUUAUUCGUGGAGCUUGCAAUACUAUGUUGAUCUGCUGGCGCAGCGCAGCUGCUCCAUUGGAACCCUAGCUCCUGCAUCAUUAGCACCGUGCUGAGUUGAUGAGCCUGCAGAUGGGGGCUUAAUGUCGGAGGAGCAGCAGCUGCCAGCUGACUUUCAACUGAUUGGAGUGAUUCAAGCUCAUAUGAGCUUAACUGAUCAGUACUGCUGCUUCUGAUCAAGAGAGAAAUUAAGAAAAUCGAGUCAGAUAUUAAUUACUUAAUUUGUUAUUAUCACUGGUAUCAUCUAUCUACCAGAUUAUUAUGAGAUAUACAGACCUUGAUCAUGCAUGACAAAAGGAACAAAGGUAAUGCGAGCGGAUGGAAGCUUUUUACAUCAAGGAAACCAACAAAUCAAUAAGCCUAGCUAGAUCCAUGCUGCCAAUAUAAUUAAUGCACACAUUGUUUCCUCUGAAGUUGUCAUUUUGUUGUGCUUGCUACAAUUCCCCAGAAUCUCAGAAGGAACAAGGAGGUAGCAGACAAGAAGCCAGAGAAGAAAAUCCAAAUCCUAGGAAUCCCAGCAUUGGAGGCUGGCUCCAUUGGUGGUUCAAUCCAAAGGUGUUGGGAGCAGGAGCAAAGGGCAUGGAAGGCCAUGGGAUCAGGUCAUCUUGCAAGAGAUGAUUAUCACAGAGGCUGGAGGAGGAAGAGGAGGAGGCCAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.03%
ME_num:
MEP:
47.76%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.79
Avg Expression:
2.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.34922912763764 | 0.0136331749604463 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.22486116410536 | 0.0200938722793683 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.52684542272505 | 0.0192073613655086 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.06241038500139 | 2.50911741783614e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.89294384432246 | 0.0155252186883167 |