RiceNCexp:Browse

OSA-LNC107280166

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr2

Start:

22299498

End:

22305347

Strand:

Ref_name:

LOC107280166

Sequence
(XR_001543726.2):

AUCGAUGGAUCGAUGGAUCGCGGCCAGCUCAGAUAUCUCUUCGCCUCUACUCCGCCGGGAGCAACAUGUGUCGCGGCUUUUGCUUCGCUUCCACGGCCACAUGCCGCGCCACGGGCACCCGCGCGCGCGCGCGCCCGCGCGCCGUCCUCACGCCGCGUCCGCCGCCCAGAUCCGGCGCACGCUCCUCCCCCUUUUGAGCCGCCAUCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGAUCUCGUGAAUUCCCCUCCCUGACCACUCUCCCGGCCCCGGCCCCAGCCACCACCUAAAUCGCAAUGCCUUUCUCCGCUAGCUCCCGCCGUCCCCUCCCCUCGACGGUGCCGGUGCGGCGCGCGCGUGGUUUCUCAGAUUCAUGCAAGGGGAUGGUGACAAGCUUGUGGCAGCAACUGCACAUCUUGCAAGAAAAUCUUUAGGGUUUUUCAGACCAUACCGAUGAUUUUCUUGCAAGUUGUGCAGUUGUUGUCUCAAGCUUGCUGCCUCCCUUUGCCAAAACUAUCAAGUGAGAAAGCAGGGUAGAGUUAUUCAAUUACAGGCACACAAGACAAAAUUAAAGUAAUAAACAUGUCUGACCAACAAACACAAUGAUUAAUAACAAAACUCUUGUGGCAUGAGAUAAUAUUGAAGCAUGAUGCUUACAACAGUUAUAAUAUGAAAACUAGAUGGAGGCAGGUACAUGUUUUGACAAGGUUGACAUUAUCUUAAUGGUUCUUCUAAAUCUUUUGAUUAACAAAAAUAUAUUUAUUUCCAUGGAUGCUAGUGCCACCAGGCAAUUGCAAAUGAACUCAUCAACAUAUGAACAUCUAGCAAGGUGAGUAAAGUCUGGUAAGGUGCUAGAUGAGUAAAGUCUGGUAAGGAAGUCAAACAUCUAAUAUGUAUGAAAAUUGUUCCUAGUGUUCUUAUAAUGAAGGCUGCACAUGUAAACUGUUUAGUCCAUCCUGAUCAUCUAUUGUUGUUUACUCUGAUCAGAUUACGUCGUCUCUACAUUGUGUAUUGGCUUCCACUGCUGAAUGUUUCUCUUAUUACCCAUGACAUGCUUGCUUGGAAGGGCAAUUUUGAGUUGAUCAUGAGGCCAGUCACAAUUCUUAGUAGUGAAUUAUGAAUUUCUAAAUGCAUUAUGUUAGUUUCAUGGCUUGAUCCUUGGUUUCUUUGUUUUGUAGGUUUGCAUGAAUUUCUCUAGGAAUGCCCAGUGAGUGAUCCUGUAAAUUUUGGAGUUGAUUGUUCAUCAGAAUAGCACUAUAAUUUUCCUGUCACCUGUGCUUUGGUAGCGGAACGUUCAUUGUCCCAUGCUACUCAGCUUUGUACUUUUGUAAAUCAAAUGAGACUGAAUAAUAUAUGUUUACUUUUGGAAGGAAAAAGAUGUGUAUGACUGUUCUCAAGCAAAUGAAAAAUUCCAGCUUUUAUGAAGUUAA

Sequence
(XR_003240393.1):

GCGGCAUUAAUAGAUCGAUGGAUCGAUGGAUCGCGGCCAGCUCAGAUAUCUCUUCGCCUCUACUCCGCCGGGAGCAACAUGUGUCGCGGCUUUUGCUUCGCUUCCACGGCCACAUGCCGCGCCACGGGCACCCGCGCGCGCGCGCGCCCGCGCGCCGUCCUCACGCCGCGUCCGCCGCCCAGAUCCGGCGCACGCUCCUCCCCCUUUUGAGCCGCCAUCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGAUCUCGUGAAUUCCCCUCCCUGACCACUCUCCCGGCCCCGGCCCCAGCCACCACCUAAAUCGCAAUGCCUUUCUCCGCUAGCUCCCGCCGUCCCCUCCCCUCGACGGUGCCGGUGCGGCGCGCGCGUGGUUUCUCAGACACUCGAGGGAAUUAUGGGGGGUUUUGGAGAGUGAGACCACAAUGCCAGGAAAUUAUAGUCAACUUAAAGUUUGGUGGUAAUAUAUUAUGGUUCAUCAGCUUGCGUGCAUUAGUGGCAGUUGAUUUAAAAGGGCACGAUUCUGUCGGGAACUUCUGAAUUUUGUUUACAAAACUGUGCAGGAUUUACAAAUUAAGUAGUGGUGUUGGAUUGUGUCCACUUUUGUUUGAAUAAUAAUGCGAUGUAGGAGCUACAUUUCAGUGCUAUAAGAAGAAAUUCAUGCAAGGGGAUGGUGACAAGCUUGUGGCAGCAACUGCACAUCUUGCAAGAAAAUCUUUAGGGUUUUUCAGACCAUACCGAUGAUUUUCUUGCAAGUUGUGCAGUUGUUGUCUCAAGCUUGCUGCCUCCCUUUGCCAAAACUAUCAAGUGAGAAAGCAGGGUAGAGUUAUUCAAUUACAGGCACACAAGACAAAAUUAAAGUAAUAAACAUGUCUGACCAACAAACACAAUGAUUAAUAACAAAACUCUUGUGGCAUGAGAUAAUAUUGAAGCAUGAUGCUUACAACAGUUAUAAUAUGAAAACUAGAUGGAGGCAGGUACAUGUUUUGACAAGGUUGACAUUAUCUUAAUGGUUCUUCUAAAUCUUUUGAUUAACAAAAAUAUAUUUAUUUCCAUGGAUGCUAGUGCCACCAGGCAAUUGCAAAUGAACUCAUCAACAUAUGAACAUCUAGCAAGGUGAGUAAAGUCUGGUAAGGUGCUAGAUGAGUAAAGUCUGGUAAGGAAGUCAAACAUCUAAUAUGUAUGAAAAUUGUUCCUAGUGUUCUUAUAAUGAAGGCUGCACAUGUAAACUGUUUAGUCCAUCCUGAUCAUCUAUUGUUGUUUACUCUGAUCAGAUUACGUCGUCUCUACAUUGUGUAUUGGCUUCCACUGCUGAAUGUUUCUCUUAUUACCCAUGACAUGCUUGCUUGGAAGGGCAAUUUUGAGUUGAUCAUGAGGCCAGUCACAAUUCUUAGUAGUGAAUUAUGAAUUUCUAAAUGCAUUAUGUUAGUUUCAUGGCUUGAUCCUUGGUUUCUUUGUUUUGUAGGUUUGCAUGAAUUUCUCUAGGAAUGCCCAGUGAGUGAUCCUGUAAAUUUUGGAGUUGAUUGUUCAUCAGAAUAGCACUAUAAUUUUCCUGUCACCUGUGCUUUGGUAGCGGAACGUUCAUUGUCCCAUGCUACUCAGCUUUGUACUUUUGUAAAUCAAAUGAGACUGAAUAAUAUAUGUUUACUUUUGGAAGGAAAAAGAUGUGUAUGACUGUUCUCAAGCAAAUGAAAAAUUCCAGCUUUUAUGAAGUUAA

Sequence
(XR_003240394.1):

GCGGCAUUAAUAGAUCGAUGGAUCGAUGGAUCGCGGCCAGCUCAGAUAUCUCUUCGCCUCUACUCCGCCGGGAGCAACAUGUGUCGCGGCUUUUGCUUCGCUUCCACGGCCACAUGCCGCGCCACGGGCACCCGCGCGCGCGCGCGCCCGCGCGCCGUCCUCACGCCGCGUCCGCCGCCCAGAUCCGGCGCACGCUCCUCCCCCUUUUGAGCCGCCAUCGCCGGCACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGAUCUCGUGAAUUCCCCUCCCUGACCACUCUCCCGGCCCCGGCCCCAGCCACCACCUAAAUCGCAAUGCCUUUCUCCGCUAGCUCCCGCCGUCCCCUCCCCUCGACGGUGCCGGUGCGGCGCGCGCGUGGUUUCUCAGACACUCGAGGGAAUUAUGGGGGGUUUUGGAGAGUGAGACCACAAUGCCAGGAAAUUAUAGUCAACUUAAAGUUUGGUGGAUUUACAAAUUAAGUAGUGGUGUUGGAUUGUGUCCACUUUUGUUUGAAUAAUAAUGCGAUGUAGGAGCUACAUUUCAGUGCUAUAAGAAGAAAUUCAUGCAAGGGGAUGGUGACAAGCUUGUGGCAGCAACUGCACAUCUUGCAAGAAAAUCUUUAGGGUUUUUCAGACCAUACCGAUGAUUUUCUUGCAAGUUGUGCAGUUGUUGUCUCAAGCUUGCUGCCUCCCUUUGCCAAAACUAUCAAGUGAGAAAGCAGGGUAGAGUUAUUCAAUUACAGGCACACAAGACAAAAUUAAAGUAAUAAACAUGUCUGACCAACAAACACAAUGAUUAAUAACAAAACUCUUGUGGCAUGAGAUAAUAUUGAAGCAUGAUGCUUACAACAGUUAUAAUAUGAAAACUAGAUGGAGGCAGGUACAUGUUUUGACAAGGUUGACAUUAUCUUAAUGGUUCUUCUAAAUCUUUUGAUUAACAAAAAUAUAUUUAUUUCCAUGGAUGCUAGUGCCACCAGGCAAUUGCAAAUGAACUCAUCAACAUAUGAACAUCUAGCAAGGUGAGUAAAGUCUGGUAAGGUGCUAGAUGAGUAAAGUCUGGUAAGGAAGUCAAACAUCUAAUAUGUAUGAAAAUUGUUCCUAGUGUUCUUAUAAUGAAGGCUGCACAUGUAAACUGUUUAGUCCAUCCUGAUCAUCUAUUGUUGUUUACUCUGAUCAGAUUACGUCGUCUCUACAUUGUGUAUUGGCUUCCACUGCUGAAUGUUUCUCUUAUUACCCAUGACAUGCUUGCUUGGAAGGGCAAUUUUGAGUUGAUCAUGAGGCCAGUCACAAUUCUUAGUAGUGAAUUAUGAAUUUCUAAAUGCAUUAUGUUAGUUUCAUGGCUUGAUCCUUGGUUUCUUUGUUUUGUAGGUUUGCAUGAAUUUCUCUAGGAAUGCCCAGUGAGUGAUCCUGUAAAUUUUGGAGUUGAUUGUUCAUCAGAAUAGCACUAUAAUUUUCCUGUCACCUGUGCUUUGGUAGCGGAACGUUCAUUGUCCCAUGCUACUCAGCUUUGUACUUUUGUAAAUCAAAUGAGACUGAAUAAUAUAUGUUUACUUUUGGAAGGAAAAAGAUGUGUAUGACUGUUCUCAAGCAAAUGAAAAAUUCCAGCUUUUAUGAAGUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

LEP:

0.2%

ME_num:

MEP:

16.26%

HE_num:

410

HEP:

83.33%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

coleoptile

Tau :

0.64

Avg Expression:

53.56

Tip: OSA-LNC107280166 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	1.80118701619582	3.35603232469141e-33
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	1.83067852912679	4.74663562123524e-32
3	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h	1.73988608608093	1.33619260432373e-08
4	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h	2.47757563788768	0.00153237720886813
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	3.63436736889834	7.82602752621024e-193
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	2.02244868488413	2.01211015348736e-29
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	3.02991814776022	3.06967242987566e-122
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	3.14133253224079	2.92093125224676e-126
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	2.69555896457166	1.03684531505704e-114
10	Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 8_days_after_shift	1.24200427502446	1.57021366410938e-17
11	Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift	1.0962466576004	1.0347295795124e-09
12	IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h	2.39051402755737	6.46825940004161e-22
13	IR64 // panicle // Dawn--/--IR64 // panicle // Dusk	1.63573334263637	1.32130491692425e-10
14	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"	1.56043905041709	5.24972587392939e-16
15	Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"	1.56111905104824	1.48388543452389e-36
16	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"	-1.59740317224684	2.05088956773293e-14
17	9311 // leaf // control--/--9311 // leaf // salt	1.23048295407381	4.77701467238537e-06
18	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	3.41181598515652	6.02684075271796e-173
19	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	2.3522353335994	5.3499499889723e-61
20	Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day	3.00966717701689	1.57958199404231e-29
21	Nipponbare // panicle // AM--/--Nipponbare // panicle // PM	1.57556642435075	2.35883708909619e-05
22	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	2.81663009845405	1.27333429829337e-71
23	Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day	2.59383810794658	6.33049014007368e-24
24	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	2.58922317645673	1.04206278953317e-114