RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280143

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

25354000

End:

25355786

Strand:

+

Ref_name:

LOC107280143

Sequence
(XR_001543486.2):

GGAGCCCUCAACUCUGGACCUCAAGUCCAACAUCGUCCAGGGCAGCAACAUCCAUCCCCUCGGCCUCAUCGCGGCAGCGCCGCUCGUCGCCCUCCCCUCAGACCUCACCGCCGGUGCGCGGGCCACAGUUCAUCGCAAGCAACUAAGCCACAGCCUCGGGAGGGAGUCGGGGGGAAGGGGGCGGCGCCGUCCACCUCAGCUUCCAGCACCUCCUCAUGGCGGAGGCACCGGCAGAAGGCCAGGCCGACACGCCGCUGUAGCUCAGCGCCGAUUAAUUUCCUGUUCGAAAUCGGAGCAAGCCAACAUUGGUGCUCUAAUUUAUGAGACGGCGGUGGCGCAACAUGAGCAAAGAGCGACAUGAAAAUGACGGACACAAUCACGACACAGCGGCACAAGUGCAAAGCCAAACAGAGACCGCGGUGGAGUUGCAGGGUGUUUGCCGACAGAGGCCCAGUGUCAGAGAGGUGUCGAGGUGUGGGGGCGAAGGGGAGGCCUGGUCCGCCCCGGCAGUAGGGCUCCUCCUCUUCCCCGGCGCGAUCAGAAGGCUGGUGCCUCCCCCAAGCGCGGAGGCCGGCAGGCCGCCGCUCCCGGUUGUCUCGUCUGUUCGAACCGAAUCUGGUGCGCUCCCUUGUCAAACGGCAAUCUCCACUGUUUUGCUUGGUGUGUUUGUGGUUGUGUGCAUAAUCUAGGUUGGAGUUCUUUUUUUUAGUCUAAUUGUACUGGUAUGGUUAACUCCAUACUCAAAUUAUCACCACUGGUAAACUAAACUGUCUUUUGCAAAGCUACAGAAUUUGGAGCCAUAGACAAUAGCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

66

LEP:

13.41%

ME_num:

180

MEP:

36.59%

HE_num:

245

HEP:

49.8%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.64

Avg Expression:

13.11

Tip: OSA-LNC107280143 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.230551156406054.15892447006789e-08
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.636831515353550.00163919498946313
3Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"-1.179909873313070.0263221730148224