Chr:
Chr2
Start:
21060503
End:
21063265
Strand:
+
Ref_name:
LOC107280142
Sequence
(XR_001543484.2):
ACGCCGGCGACGAAGACGAGGGCGAGGCCGCCGGCGAUCGCCGCCGUGUUCUCCGACCCGUCCGCCGCCGCGCCCGCCGCCCCCGAGCUGAUGGCGCUCUCCGCCACGUACACCGUCGGCUUCGCCCACAACCAAUUCAGAUGGACUUACAAAUUGUUGCAAUUUGGACCUGAUUGAUGCAUGAGCCACUUGAUGAGCUCUUCUCCAUGUCCUCAAACUGAAACAUGGUUGCACGAAGGAAGGAUGGAGCUAGGCUUGCUCAUCGUCAACCAUAAACCGUCGAGAUGGCCGCCUCAAAUCGACGCAAGCGCAGAUCCGCUCAAGCUUAGGGGCUAUGUGGUGCAGGAGCAAUUUGACGAGAUGCGAACAAUGCGACGGAGGGUGGCACUUCAAAGUGCUCUGUUAGUUAUUGCAUGUUUGAGCUUUCACAUCAGCCUAGCGAGCUCAAGGAGAGAGAGAGCGCAAGGGAAGAGAGGGAAAGAUGGAGAAGAAGCAAAGUGUCCCAAAGUGAAACUAUAUGUAAUCUUUCCCGGUUCAAACUAAAAAUGUUGUGCUGCUCCUAUUCCAACUUGCCACAUGGGUAAAAAGAAGUGGCCCUAUAUGCAAUUUACUCUUUUAAGUUGCUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.27%
ME_num:
MEP:
89.02%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.56
Avg Expression:
5.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.43111936737234 | 0.0264200121512357 |
| 2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.65479677598912 | 0.0249144510384227 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.12464930975708 | 0.00144037782091706 |