RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280130

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

33213300

End:

33219088

Strand:

-

Ref_name:

LOC107280130

Sequence
(XR_001543405.2):

CUCCAUCUUAUCAGGGUCUAUGUGAUCGUUCGCUUCAGCAUUGGUACGUUGGUUUUGGUCAGUACCUGGUGAUACAUCCUGCGCGUCUUCAUCGUACUGCAAUGUUCUCUGUAGUGCCAGUAGGAACAAAAGCAAUGGGAAAGAACAGUUGGUGCCUGCUUUUCAUGAGCAUGGGAAGACAGGAUUGAAAGAAAACUUACAUGAUCAGCAUCUGAGGAUUGAAGACCAACAGCAUUUUGACAUUGGGGCCGACUGUUUGAUGCAUGUGUACCAACCUUGGAACCACUCGCUGCUGGUUUGGACACAGAUAACUUUCCUAUGCUAGAAGCUCCUAAAUCUGGGCCAUCAUUACCAUGACAAACAGGACUACCAGAUUUGAAUGAACAUAUACUUUCCUCAGCAGGGCAGGGAGUGCAAACACUGUCUACUUCUUUGGUCUCAAUGGGAUGAGAGAAAAAAUGUAUCGCACAAUUAGAAGAAAAAUAUUUUGUGCUCCAACAGCAACUACUGAAAGUAUGGUGUGCUCAUAAGUCAAGAGGCAUGUACCUGAGGUAGACAGACUAUCUGCUCGACCAGGCUCCCAUCCAUGUCACAUGACUCAUCAACAUUCUUCGGACUACUAUGUAUCUUAGAUGCUUUGGUCUUAGAUGACUUACUUUUAUGAACAAGUGAG

Sequence
(XR_001543406.2):

CUCCAUCUUAUCAGGGUCUAUGUGAUCGUUCGCUUCAGCAUUGGUACGUUGGUUUUGGUCAGUACCUGGUGAUACAUCCUGCGCGUCUUCAUCGUACUGCAAUGUUCUCUGUAGUGCCAGUAGGAACAAAAGCAAUGGGAAAGAACAGUUGGUGCCUGCUUUUCAUGAGCAUGGGAAGACAGGAUUGAAAGAAAACUUACAUGAUCAGCAUCUGAGGAUUGAAGACCAACAGCAUUUUGACAUUGGGGCCGACUGUUUGAUGCAUGUGUACCAACCUUGGAACCACUCGCUGCUGGUUUGGACACAGAUAACUUUCCUAUGCUAGAAGCUCCUAAAUCUGGGCCAUCAUUACCAUGACAAACAGGACUACCAGAUUUGAAUGAACAUAUACUUUCCUCAGCAGGGCAGGGAGUGCAAACACUGUCUACUUCUUUGGUCUCAAUGGGAUGAGAGGUAUGCUGCAGAUGAACACUGAUUAUCAGUUUCCAGUGUUUUGUAACAAAAAAAUGUAUCGCACAAUUAGAAGAAAAAUAUUUUGUGCUCCAACAGCAACUACUGAAAGUAUGGUGUGCUCAUAAGUCAAGAGGCAUGUACCUGAGGUAGACAGACUAUCUGCUCGACCAGGCUCCCAUCCAUGUCACAUGACUCAUCAACAUUCUUCGGACUACUAUGUAUCUUAGAUGCUUUGGUCUUAGAUGACUUACUUUUAUGAACAAGUGAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

376

LEP:

76.42%

ME_num:

114

MEP:

23.17%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.94

Avg Expression:

1.39

Tip: OSA-LNC107280130 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN3.754461100541580.0485204982291019