RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280128

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

2964514

End:

2969428

Strand:

+

Ref_name:

LOC107280128

Sequence
(XR_001543339.2):

GGAAAGGUUGCCGUCUUGCGAGAGCUCGGCGAGGAACUGGUGAAGAGAGCCCUUCUCCUGCUCUGUGCAGGAGCUGGUGAGAGAAGCCAAGGAGAUCAGCAGCAGGAGACCAAGGCUCAGGGAAGAUAUGGUUCUCCCCAGCUUGUAUUUUGUGAUAAUUCGGUUGAAGAUUUGCAAUUGUGUACAUGGAAAAUCAUCAUUCCGAGAGGUGCAUAUAAUUUGGAGAAAUCAUUGGCGUUGUGGUCAUGGUGUGUACGCAUAUUUUGGACAAGAACAAAUUGAGCACAAGUGGUGGUGGUGAGUGGGCGACCCGGUGUGUUGCUGUCUUCUUCUUCUUGACCGUUUACUUUCUGUUAUCAAGCGUGCACUUUGGCUUAUUUCUCCACACGUUUGCAGCUCUUUUUCCAUCUUCUACCGGCUCCACUGUUGUAUCAUUAUAGACCAUGGAUUAUGACUGGAAAUUUGGGAGAAAUUUGAUAAUUUGACACUUUAUUCAUUGUUGUUUUGCUUUAA

Sequence
(XR_001543340.2):

CCCGAAAGCUUCGAUACUUCUCCCAGACUAGCGGCGGGGAGGCGACCGGCGGCGACAGGUGGCCGGCUGCCCGCGGCGCCGCGGAUUUGCCGUUUGCUCCUCCUCCGGGACCGUGUCACCGGGCAGCAUGACGCCGCGCGACGGCGACGCGGCGACGCCCUUCGACUGUUCGACGCAAUGCCAGGGGGAGGGGUUGGGGUUGGUCUGGUGGAAGUGGAACGGAGCCGCUUUGCUGUGAGGCGCCUUGCUCAGGGUGUUCGGCGAAAUGCCCGAGAGGCUGUCCAGUUCCGGUCGGGCGCCGACUGCGGCCGUCGAAGAUCUCGUGGAGGUGGGCUCGUCGACCAGGCGACUGAGGGGCCAUGCUUCGUGAGUGCGUGCCGACAAUGCCGCGCUCUCUUCACGCGCGCCAGUGCGCCUCCUUCGACAUGGUUCUCCCCAGCUUGUAUUUUGUGAUAAUUCGGUUGAAGAUUUGCAAUUGUGUACAUGGAAAAUCAUCAUUCCGAGAGGUGCAUAUAAUUUGGAGAAAUCAUUGGCGUUGUGGUCAUGGUGUGUACGCAUAUUUUGGACAAGAACAAAUUGAGCACAAGUGGUGGUGGUGAGUGGGCGACCCGGUGUGUUGCUGUCUUCUUCUUCUUGACCGUUUACUUUCUGUUAUCAAGCGUGCACUUUGGCUUAUUUCUCCACACGUUUGCAGCUCUUUUUCCAUCUUCUACCGGCUCCACUGUUGUAUCAUUAUAGACCAUGGAUUAUGACUGGAAAUUUGGGAGAAAUUUGAUAAUUUGACACUUUAUUCAUUGUUGUUUUGCUUUAA

Sequence
(XR_001543341.2):

UCUCUACCGGUUGACUGUAGAAUGAUCUAUUGCACAGUCAACCUUCCUGGGUAUACUAGCUACUACCGGAUGGGAUAUAUCAUAGUACUACGAAUCUGGACAGGUUCUCCCCAGCUUGUAUUUUGUGAUAAUUCGGUUGAAGAUUUGCAAUUGUGUACAUGGAAAAUCAUCAUUCCGAGAGGUGCAUAUAAUUUGGAGAAAUCAUUGGCGUUGUGGUCAUGGUGUGUACGCAUAUUUUGGACAAGAACAAAUUGAGCACAAGUGGUGGUGGUGAGUGGGCGACCCGGUGUGUUGCUGUCUUCUUCUUCUUGACCGUUUACUUUCUGUUAUCAAGCGUGCACUUUGGCUUAUUUCUCCACACGUUUGCAGCUCUUUUUCCAUCUUCUACCGGCUCCACUGUUGUAUCAUUAUAGACCAUGGAUUAUGACUGGAAAUUUGGGAGAAAUUUGAUAAUUUGACACUUUAUUCAUUGUUGUUUUGCUUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

205

LEP:

41.67%

ME_num:

281

MEP:

57.11%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_meristematic_zone

Tau :

0.80

Avg Expression:

5.28

Tip: OSA-LNC107280128 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.892527435733020.0335612621850559