Chr:
Chr2
Start:
22088489
End:
22091617
Strand:
-
Ref_name:
LOC107280096
Sequence
(XR_001543158.2):
GGGUGGCCCACGCCGUGCCAUGCCCCACUUGUCAGUGACCGUAUAGGAAUCUCUUGCACUAGGAUUCCAAGGUGACGCCCCUGUGGGCCCCACGCCCACCACAACUGGGCGGAAGGCGACGAAAGCGGGCCUCUCGCCGGCCGCCGCGUGGAGCGCCGCCACUCGCCGCCGGUGGGGCCCACCCACGGCGGCCUCUCGCGCGCUCUUGACUCGAUCGACCGGUGGAUCCCGGCCAUGCCGGGCAGUACGGCCGUGGAGAGGGGGGUGGGGUUGGUGGUGGAGGUGACGUUAGCGGUGGCGGGACUCGUCGUCGUCGUCGCCGGCGGCCGGUGGGACGGGCGGAGACGCGGCCGCCGCCGGUCGCUUUCGGGGGCUCUCUCCCUCCCUCGCCGGAAAAAUGCAACUUGAUGCUCUUCUCGAUCUGACCGUACGUCCAAUCGGAGCGAGGGUUCAGCGAGGUUUGGUGAUCGAUAACGAAGCCGUUUACUUGUGCGAGAGAGCAGCAACGAAUUCAAAGGUCACCGAUCGAAGCUGCAUUGCACAUCAGGCGAGAAGGCGAGAGCUCGAAUGGAUGAAGAAAGAAGCAUAAUCGUCUUGUGAGGUAAAAUGUUUGAAUACAGCAUAUCUGUAAAUUGUCACUGCCUUUAUAUAUAAUCUUAAAAACACCUA
Sequence
(XR_003241004.1):
UAGGUUUUCUUUUUCCCUUCCCUUUUCACCACCAAAUUAAAAUGUUUUUGGAAUGUUUUUUUCUAAAAUUUUUUGCCCUUAAUUUCAAGGGUUAGCAGUUCUUGUCGUCUACUCCUUCUGUCCCAAAAAGAACUAAUUUUUUUCUAUGAAUAUGGACAUGCAAAAUUGAUUUUUUUUGGGACGGAGGGAGUAGCUUGAUGCUCUUCUCGAUCUGACCGUACGUCCAAUCGGAGCGAGGGUUCAGCGAGGUUUGGUGAUCGAUAACGAAGCCGUUUACUUGUGCGAGAGAGCAGCAACGAAUUCAAAGGUCACCGAUCGAAGCUGCAUUGCACAUCAGGCGAGAAGGCGAGAGCUCGAAUGGAUGAAGAAAGAAGCAUAAUCGUCUUGUGAGGUAAAAUGUUUGAAUACAGCAUAUCUGUAAAUUGUCACUGCCUUUAUAUAUAAUCUUAAAAACACCUA
Sequence
(XR_003241005.1):
UAGGUUUUCUUUUUCCCUUCCCUUUUCACCACCAAAUUAAAAUGUUUUUGGAAUGUUUUUUUCUAAAAUUUUUUGCCCUUAAUUUCAAGGGUUAGCAGUUCUUGUCGUCUACUCCUUCUGUCCCAAAAAGAACUAAUUUUUUUCUAUGAAUAUGGACAUGCAAAAUUGAUUUUUUUUGGGACGGAGGGAGUAGCUUGAUGCUCUUCUCGAUCUGACCGUACGUCCAAUCGGAGCGAGGGUUCAGCGAGGUUUGGUGAUCGAUAACGAAGCCGUUUACUUGUGCGAGAGAGCAGCAACGAAUUCAAAGGUCACCGAUCGAAGCUGCAUUGCACAUCAGGCGAGAAGGCGAGAGCUCGAAUGGAUGAAGAAAGAAGCAUAAUCGUCUUGUGAGUACAAAAGCUCAGUGCCAGACACUCAAUCAGGGGGUACCAUUUUUCCUCGAAGCGUCAAUAGAAGCUAGAGACAUGAUGCUAAAUGGGUUGUUAAGGCGACGACAAUAUGUAAUAAAUUAAUUAGUUACUGUAAUUAAUUAGUUAGUGCUACUCCGAUUAAGGAACGGAUGCAGUGUCAUCAUGAUCUUUUGGACUGCACCAUUGGGAGCUAGGAAGGAUUCUUCCAUCCAGAUUCAAAAGGACAAGUUUGCUUCUCCACAUAUGCCUUUUAAAAAAACCCCGGGAGCAAUUAAGAAUAAACCACCCUACUUGCGAGUCUGUGACGCAAGCAACAGCCAUUGGCCCGGCACAAAGGUUUCUCUGAAUAUAUAAGCUCCUUGCUCAACUAUCAACGCCUGCAACUGCAUCUCUAAUAAUUAAGCAUCCAAAAUGCUCCACGUACAUCAAGCACAAGCUCAUACAAGUUAGCUAGCUGCCAAAGUUAAUUAGCAUCACCGGCAUAGUGACAUGUUAGGUGUAACAGAUUCCGUAUAUCCCUGUGGCCCACAUGUCAGAAGAGUACUUAAGCUCUUGUUCGGAAGGCUUGAGAUUCUGGGGUGGGUAGCCACUGGUAAGCAUCAGGAAAAAAAAUAGAUUUUCAGCUUCCGGCUUUAAUUUAUUUUCUAAACUUUAUAACUUCAAUUCUUAGGAUCUUCAUAAAAAUCUAAACUGUUAAGGAGGGCUGAAAACUCUUUAGAAAAAAGUUGCAGUUGUCAAAAGCUUCUAAACAGGACCUAAGAUUGAUUAGAUGACACAUUACAACUUAACUUGUAAGCAUGGCAAUUAGCAUGGAGCUACUACAAUAUAAUGUACUACUUCCUCCAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.5%
ME_num:
MEP:
16.26%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
10.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.54300446351875 | 0.000679788326564042 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.63818618979371 | 0.00037533658970497 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.91311049874549 | 0.00551954921049524 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.84087845537123 | 0.0273826349314591 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.0479206865323 | 0.00253825706017256 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.24823982064452 | 0.00992485669132621 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.72520117255012 | 0.0449806807236385 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.92785031599041 | 0.00143254671402194 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.48058267222635 | 0.0414094553499226 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.54198230482077 | 0.00652601569601432 |
| 11 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.91497836503187 | 0.00985469052979581 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.87634409102312 | 0.0058400228467016 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.07393859959909 | 8.56581005042185e-05 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -6.2443992680203 | 0.000283096708292102 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.50038389167981 | 0.000731412482392686 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.30884011537523 | 0.00171368821275606 |