Chr:
Chr2
Start:
33417701
End:
33421405
Strand:
-
Ref_name:
LOC107280092
Sequence
(XR_001543153.2):
UAGCGGAGUGAACGCCUCGCCCCGCCUAUUCUUCCACCAUCCAAAAUCCUCCACCAAGCGCAGAGAGAGAGAGCCUCACACCAAACGGUGUCUCCCAUGGACGACCUCGCCGUCGCCCAUCCCAUCACCAGCGUCUACUUCCGGCUCGCCGUCCUCCCUCCCGGGGUCGACCUUCUCCUACCUCUUCCCUGACGGCGAUGAGGAGAGGCAGUGGUUGACCUCAGACAGACGUGGCUCACUCCCAGCCACCGCUCCUUGAUGGGAUGAGGGGGUGGCGGCAGCGGCGAGUCGUGCCUUUCCGGCAGCCCCGUGCCCGACCGCCAGCGUCGUAGUUGCAGAAGCGCCGCCGGGAGUUUGCUUGACCGGGCUCGCUCUCCGCCGGUGAGGUGGAGACGGAUUUGCACGCGCUCUAGAUCUGAGCGAGUGGCUGUAGAGCUUGUCUCUGGCUAGAUCUGAGCCAGCGGCUGGCGGAGCCUUCAUCCGGCUAGAUCUGAGUCGCCGGGCUCCCUCUAGAUCCGAGCUGGUGGAGGUCGUUCGGCUCGUUCUUCUCCAGUUAUCUUGAGGUUCUGCAGCGCAACAUGCCAGUUCAGAAUCACGAAAAAAUAAUGGAAGAUGCACUGAAGAGGGAGUUCCAGCAUUGCAUGUUUAGUCACGCGCCUCCUCGUGUACACAUCCAGCAGAGCCAAGACCCACCUGAAUUAGAGAUCAACUUGGGUAUGGCUGUUGAUGAUGGCGCGCCAGUGCUCCCCCAUGGAAAUCAUGAUAACCAUGCACAUGCACUUCACCGACUCCUGAAGCUUGGCAUUCUCGGGGGACCUGAUGGAUGUCUUCAUGAUGUGGUCUAUAUCUAGUAGAUUUGUUUCUGUGAUUCCUGACUUCUAGAAGUGUGGUUUGUGAGUAUGACUAAUAUGUAGCCACUAUUCUGGGUUUAGUUGAGACUUGGGACAUGAUUAGGCACUAUUCUGGCUAGUAGUAGAAUGUAAGUAAGCGAAGCAUGCCUGGUGAUGAUUGUAGCCUAUCAUCGAAGCUUUGGAAGUUGGAUUCAGACUUGAUCUGCUGCUGCUCCUUUCAUUGGGAGUAUGCCUGAACUUCCUUCUCAACAAGAGAUUUACUUCAUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.68%
ME_num:
MEP:
6.71%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
5.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.82108755549644 | 0.00189299721280788 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.82618877717408 | 0.0273091410368252 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.03513940832106 | 0.00259477526467238 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.20199330262954 | 0.00183428797408886 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.59686110989338 | 0.00029921731327172 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.87679214393816 | 0.0127816323245341 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.62557953000128 | 0.0130084892831065 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.33570175738526 | 0.012884887698026 |