RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107280087

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

16132573

End:

16135456

Strand:

-

Ref_name:

LOC107280087

Sequence
(XR_001543139.2):

CCACCUCAGGACAUAAGGUGGGAAGAGGAAAACCCCUUCUUCCUCCCCUUUCACUUCCCUUGCUUGUUCUUUCUUUUCCUCAUCAAGCUCAUCUCAUUUCUCCUCCCCAAAUCCCAUCCAAUAGCUCAAGAUCAAUCCCUGCAUGUUAGACCACAACAAUCCCCAUCAUCCAAGCUUUCCAUCCAUCCCAACAUAAUGUGCAAGGAGAGUUGAGAGAGAUCGAGAAGGAAUAAAAGAGUGGUGGUUUCAGCCUGCAGGGCAGCAGCAGCAUUUUGUUUUCCUCCAUUUGAUCUAGUCGUUCUCGGGUCGUCAUCGUGUUUGUUGUGUUGCCGGGCAUCUCCAACGCCAUCGCUGCUUCCUGGACCUCUCCGACCCCUUUCAGCUGCACGAUUCGGAGAUUCCGGAGAGUAACGAGCCAUAUCCCAAGGAGGAUAGUUACUACCCUCAGCAGCAAGGCAAGCACCUUAGCAUAUAGAACCUAUGCUUUCUCUAAAAAGGAUUUGGUUGCAAUCUAUACGUAUAUAUAUGCAUGCAUUGCCUAGAUAUUAAUAUUGUCGGUUUAUGGUGUAUGGGUAGAACCUAUUUAUGCAUUUAGUUCUUGUGAUAUUGUUGUCCUUAUACCCUAUUACCACUAGUUGGGAUUACUUGGGACGUCUUAUUCAUUAAUGCUUAGCCAUGCUUAGUGUUAAUAGAACUAUAGGGAUGGACAGUGCUAUUAAUUGUGGUAUAUAGACAACUUGCAUUAUUGGGCAUAAAACUUGAGCACUUACACUAAAUAAUGGUUGAUAAAAUAUGUUGGACUUGGACGGGUGAUAGGACGAUGAUGGGAGGUUGGUUUCCCCUGAUGCAAGUAGCCUCGUCUAGGUCGUUAAGGACCGAACAUUUUGACAUCUAAUCAAGCAUCUUACGUACUUACCACAUGUCUUAUUUGGGACCGGCUUGUUCUUACUAGUUCUACUGUGAUCAUUUAUACCACGUUGGAGAGUCGUGAGGCAGGUAGCCUUUGGAGGGCCUCGGGUGCCUAGGUUUGGCCGGGGGUGCCUCCCGCGUGGCGCGCCCGCCUUGGUCACAUCAUGCACGCACGUGACUGAGUCGUCGGGAACCCCGACGUGGUAUAGAUGGUUGGGGUGGGAUUAGGAAAGGCAUGUAAUGAGCUUGUAUCACUCGUGUACCGCACUCGUCGGGGUGUGUAGCUUUUGAUCCUUGUUCAUUUCGUGUGGGUCCAGUUGUACACCUCUGAUCAGAGUAUAAUCUAUUCGAAUAGUCGUGUCCUCGGUUAUGGACAAUGCUUGAUGUGUUAGUCAGUUAUGUUAGCAUCAAAUGUGGAUUAUUAUGGAUGGGAUUAUGUUUGAUGGUGGUGUUGGCAUAUUGUGCCAUGUUGGUAUGGACUUUGGUGGUCCAUGGUUGAUGAUGAGAGUGCCGUUUGGGCUCAUUUGCUUAUACAUUUCAGAAUUAUAUACUUACUGUCCAUAAAUUAAAAUGAUGCUAGAUUUACUUGUCCUUGCUUAUUUUACUCAUUAAUUGCUUACAAAAAUUAGCUUUAUGCAAAUGUUGAACCUAGAGACCCACUAUAGGCUAGAAAGCUUGCAUACUUCUCUCUCCCUUAUGUAUAUACAAUUUUGGGUAAGACUUGCGAGUACAAUCUUGUACUUAACCCGGUGUCUGCAA

Sequence
(XR_003240739.1):

CCACCUCAGGACAUAAGGUGGGAAGAGGAAAACCCCUUCUUCCUCCCCUUUCACUUCCCUUGCUUGUUCUUUCUUUUCCUCAUCAAGCUCAUCUCAUUUCUCCUCCCCAAAUCCCAUCCAAUAGCUCAAGAUCAAUCCCUGCAUGUUAGACCACAACAAUCCCCAUCAUCCAAGCUUUCCAUCCAUCCCAACAUAAUGUGCAAGGAGAGUUGAGAGAGAUCGAGAAGGAAUAAAAGAGUGGUGGUUUCAGCCUGCAGGGCAGCAGCAGCAUUUUGUUUUCCUCCAUUUGAUCUAGUCGUUCUCGGGUCGUCAUCGUGUUUGUUGUGUUGCCGGGCAUCUCCAACGCCAUCGCUGCUUCCUGGACCUCUCCGACCCCUUUCAGCUGCACGAUUCCGGAGAGUAACGAGCCAUAUCCCAAGGAGGAUAGUUACUACCCUCAGCAGCAAGGCAAGCACCUUAGCAUAUAGAACCUAUGCUUUCUCUAAAAAGGAUUUGGUUGCAAUCUAUACGUAUAUAUAUGCAUGCAUUGCCUAGAUAUUAAUAUUGUCGGUUUAUGGUGUAUGGGUAGAACCUAUUUAUGCAUUUAGUUCUUGUGAUAUUGUUGUCCUUAUACCCUAUUACCACUAGUUGGGAUUACUUGGGACGUCUUAUUCAUUAAUGCUUAGCCAUGCUUAGUGUUAAUAGAACUAUAGGGAUGGACAGUGCUAUUAAUUGUGGUAUAUAGACAACUUGCAUUAUUGGGCAUAAAACUUGAGCACUUACACUAAAUAAUGGUUGAUAAAAUAUGUUGGACUUGGACGGGUGAUAGGACGAUGAUGGGAGGUUGGUUUCCCCUGAUGCAAGUAGCCUCGUCUAGGUCGUUAAGGACCGAACAUUUUGACAUCUAAUCAAGCAUCUUACGUACUUACCACAUGUCUUAUUUGGGACCGGCUUGUUCUUACUAGUUCUACUGUGAUCAUUUAUACCACGUUGGAGAGUCGUGAGGCAGGUAGCCUUUGGAGGGCCUCGGGUGCCUAGGUUUGGCCGGGGGUGCCUCCCGCGUGGCGCGCCCGCCUUGGUCACAUCAUGCACGCACGUGACUGAGUCGUCGGGAACCCCGACGUGGUAUAGAUGGUUGGGGUGGGAUUAGGAAAGGCAUGUAAUGAGCUUGUAUCACUCGUGUACCGCACUCGUCGGGGUGUGUAGCUUUUGAUCCUUGUUCAUUUCGUGUGGGUCCAGUUGUACACCUCUGAUCAGAGUAUAAUCUAUUCGAAUAGUCGUGUCCUCGGUUAUGGACAAUGCUUGAUGUGUUAGUCAGUUAUGUUAGCAUCAAAUGUGGAUUAUUAUGGAUGGGAUUAUGUUUGAUGGUGGUGUUGGCAUAUUGUGCCAUGUUGGUAUGGACUUUGGUGGUCCAUGGUUGAUGAUGAGAGUGCCGUUUGGGCUCAUUUGCUUAUACAUUUCAGAAUUAUAUACUUACUGUCCAUAAAUUAAAAUGAUGCUAGAUUUACUUGUCCUUGCUUAUUUUACUCAUUAAUUGCUUACAAAAAUUAGCUUUAUGCAAAUGUUGAACCUAGAGACCCACUAUAGGCUAGAAAGCUUGCAUACUUCUCUCUCCCUUAUGUAUAUACAAUUUUGGGUAAGACUUGCGAGUACAAUCUUGUACUUAACCCGGUGUCUGCAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

414

LEP:

84.15%

ME_num:

70

MEP:

14.23%

HE_num:

7

HEP:

1.42%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.95

Avg Expression:

8.78

Tip: OSA-LNC107280087 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-1.495576934283420.00059659749059168
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-1.295311446713560.000943953166091287
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-6.346670171510351.9729676815467e-06
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-3.012398985830423.37596776077634e-07
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-7.726021151329832.54556232616342e-09
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.378663144747940.00120384940992543
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.64376337390161.4706453090776e-05
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-1.75122865203958.26299906081642e-05
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.766788314225032.53556572874654e-11
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.082144897446241.27711588840378e-06
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-3.311808343833953.67310769925217e-08
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.018487637052243.48811836207671e-08