Chr:
Chr2
Start:
31226026
End:
31227512
Strand:
+
Ref_name:
LOC107280066
Sequence
(XR_001543113.2):
CGUGUUGCCGUUGCCUUGUGGCUUGUCGGUUCCGUCGGAAGUCCGAACACGAUACUCGCAUCGCACCGUGCUCUGUGCCUCGGGUUCACCGAGGAUAGCGGAAGGUUGGGUCCCUAUUGGGCCAUAAGGAGACGGGCCUGUUUGCAUCCAGGUUUUAAUCCGAUAGAAAUAAGUUCAUUUAAGGUCCCUUAACUUGUCAACGAAUCCGAUUUUCGUUCCUCAACCAGAAAAUAUGAUGGGUCCCUCAACUGUCAAAACCAGUGCAGAUGAGGUCCCUCGGCGGUUUUGACGGCGGUUUUGGCUGACGUAUCGCCUACGUGGCUAAUUUGACUUGGUCUUCAUCUGAUAUGGCAUUGACGUGGCGCUUACGUGGCAAUUCGACCAAAAAAAAAAAACUUCGUGGGACCCACAUGUCAGUUUUACACAUAAAUUAAUAAAAAAUGGUGGGGCCCCACCAGUCAUUCUCAGCCCCCCUUUCUUCCUCCUCUCUCCCCAUCUCCCUCUCCUCAACUCUCUCUCCCCUCUCCAGUCCCCCAUGGCUUCUGAGCGCCCGCUGCCGCCGCCGACGUCGUUGCUGCUCCCGCCGACGCAGCCGGAGUCCGCCCAUCCGCGCCGACUGCCUCGUUUUCUCCCUCGAGGCCAACCCCUUCCGCCGGGAGCCCGACCCAUCGGCCGCGUCGCAGCGGGAGGUGGAGGAGUCCACCAUGGCGCAGACGUUGGUGGGCACAAGACUAGCGUCGGCGUCAGCCUGCAUCACCUCGAGCAGCUUCGCCGGGUCAAGGCCGUAGUCUGUCUCCGCUCCAGUGGGAUCGACUGGAUGUUGGCUGGAUCGAAUAUAACAUGUUCGUGUGGCUCAAACCUCAAAGGCUGAAGCCGACGCCGGUCUCGUGCCGAACGGAUGUCGUCCAGCCGUCGCCAUCCUCGCCGCAGCGGACGCCGUGAACGACGACGUACUUGCGCUGGUGGUCUUCAAGUCGGGGGUGUCCGACCCGGGGGGCCUAUUGGCGCCGUGGUCGGAGGAUGCCGACCGCGCCUGCGCCUGGCCCAGGGUGUCAUGCGACGCGCGGACGGGGCGCGUCGACGUGGUCGCGCUCCCGGCCGUGGGUUUCUUCGGCCGCCUCCCGCGGUCCGCUCUGCUCCGCCGCCCGUCGGUCGUCGCGCCCGAGAGAGAAGAGAGAGGAGAGAGGAGAGAGGAGAGAGACGGACAGAGGGGAGAUUGGGAGUGAGGAGGAAGAAGAGGGGAGUGAGAUUGACAGGUGGGGGCCACGUUGGCCCCGCCUUUUUUAAUUAUUGUUUUUUGUGUAACUUACAUGUGGGCCCGAUGUUUUUAUCAUUUUCAAAACUAAAUUGCCACGUAAGCAUCACGUUAAUGCCAUGUGAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.54%
ME_num:
MEP:
51.83%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.69
Avg Expression:
2.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.32853600597343 | 0.0383791952546645 |
2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.96914522097991 | 0.0109850555779441 |