Chr:
Chr2
Start:
23032297
End:
23033054
Strand:
+
Ref_name:
LOC107280053
Sequence
(XR_001543095.2):
AUAGAACAAACCCUAGAGGGACUCAGGGUGGAGCAGCCGAGACUAGAGCUGCUCACUGCCUCCGUGCCUCGUAUCCAUCGCGCCGCCCCCAGCCCCCCCACGCCUCUGCCUUCACCUGCAUCGCGCCACCUCCGCCGUCCGCCUCCAGCGCCGGCGCCACCUCCGCCUCGGCGCCGCCUCCGCAUCCACUCUCCAGUCAGCCCACCUCCACCUUGGCACCUCCAUCCCGCCGGCAAGCAAAUCCACCAAGUCGUCGGCUUCUAAACCUAAACCUACAUGAUCUUCACCAAGUUGCUGAAAAGUGGAGGAAGAAGACUAAGAUGGGUACAUGUCAAGCCUAAAACUUAUUUACUAGUUGGCUGUUGCUACUGCUUGAUCUGUGAUGUAAUGUUAUCAACCUAUAACUUGUACUGUGGCAGUCGUGACUCGUAACUUGUGAGGUUCAGACUUGAGACCUAUCCUGUGAUAAUUUGGUGCUUGAUGUUGCCUAUUUUUUGGUAUUUUUGUGAUAUAUAUGUCUGUGAAAAAAAGUCUAAAAAGAGGGAAAAUGUUGUCAAAAUUUUUCAUUCCCCUCAAAUUUCGGUCUGACCGAGAUCGAAAAGACCGAGACCGAAUUUGCCGGUCAUAAGUUUUUUUUAUGAAAUUCGGUCCGGACUUUCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.11%
ME_num:
MEP:
45.53%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.79
Avg Expression:
7.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.87508989825225 | 0.0311076263532677 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.31179275008061 | 0.00207185854329199 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.22349276713188 | 0.00129089286913495 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.2462154842634 | 0.00634910316289956 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.75362557326688 | 0.0225478106057461 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.13496345456079 | 1.45630537327495e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.88440993723398 | 0.0249919258867701 |