Chr:
Chr2
Start:
6219541
End:
6220405
Strand:
-
Ref_name:
LOC107280050
Sequence
(XR_001543087.2):
GCCUCUUCAUGCUGCAGCAGCGAAGAUAAGCCGGUGAAUCGGGUCGGCAAAUUCAAUAUGGCAGCUGCUCGCCUUAGUGUUGGGUUGCAGGCAGUUCUAGUGAUGUCCCUCUUACUACUGCAGAUUAUGCCAUUUCUGCCAUGUACGCUCGCCACCGGAGGUAACUCUGCCGAGCUACUGAUCAUGGGCAAGGAGACGCAUCAAGGCCAUCAUCGUCUCUUAGCUCCAACCAAAUCAAUAUGGUCUCGUCGAAUCCUACUCCAUGAGAACUUUUCCGGGCCGCAACAUGACCCUCCUAAUCAUCGGCAACAAGGUAACUAAUUCCGUCUGUUGGGUUCGUCGUUCCACGAACAUGGUAGCACAUAGGCUGCAGUCUGCAGGCUGGUGAAGGAAGGACAACUUUUGGUUUCUCCGGAUUUUAUUUUACCUUAUCUUGAUAAAGAUAAGGGUUUUAUUUUUCAUUCUAAUUUUUCUCUUGAUAAAGAUUGUAAUUUACCUUCUCUUGAUAAAGAUUGUAAGCAAGUCGUUUUAGGUGAAUAAAGUGGUACUAGUGUUCAUCCUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.72%
ME_num:
MEP:
29.47%
HE_num:
HEP:
12.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.96
Avg Expression:
32.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.85146659750337 | 1.20036254788094e-05 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.28730880102208 | 0.0105784810286995 |
| 3 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 2.31746330154832 | 1.66562153108909e-06 |
| 4 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 3.2401202618153 | 7.472221568136e-05 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.9538890098112 | 0.00715823745530995 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.90444051604284 | 3.59147928910943e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.74675005116151 | 6.74873380467087e-05 |