Chr:
Chr2
Start:
15025772
End:
15027683
Strand:
+
Ref_name:
LOC107280048
Sequence
(XR_001543078.2):
GCAGUCAAGGUAGUCAAACUAAAUUAAUUAGAAACCUAAUUGGCAAAAUGAAGCAACUUCUAUUUGAACAAUAACUUGAACAGAAGUGUAAAUUUAUAAUAAUUUAUUCAAAUACUAGUUUAUUUAUCACCAACAAAUAUAAAUUUUGUGGAAUUUUUACUCUCUGUUUUGGCCUUCUAAAAAUUCAAACCAACUUUCAGCCUAACCAAUUUCAUCUUUUCACCAGAAUUAAAAUAUUUCGAAUUUUUUAGUGAAACUUUGAAAAAUGAAAACUAGGUGUCUAGGUCUAUCUCCACACAAAAGGAUAAAAUUCUAUCACUAUUAUUUCUUGAGCUAACUGAGUGUCAUGGUGGAAGAGGUGUAAAAUUGCUGAAAAUUCCUGAAAUCUACCCAAAUUCUUGUUCCACCUCUAUUCCCGUCCUUACCUCUUAGACCACCACGACUUGGGCCCACUUGUCACAGACCUUGGGUGCCUCUUUAUCCCAGAACCCACCCUUGGGUGUUCACCCCACCUCAGGACAUAAGGUGGGCAGAGAAAAAAACCCCUUCUUCCUCCCCUUUCCCUUCCCUUGCUUGUUCUUUGUUUUCCUCCUCAAGCUGAGCUCCCAGCUCACUUCUCCUCCCCAAAUCCUAUCUAAGAACCCAAACUCAAGCUCUGUAUGUUAGACCACAAUAAUCCCCAUCAUCCAAGCUUUCCAUCCAUCCCAACAUCUUGCACAUGCAUGAAGAGUUGAGAGAGAUCAAGAAGGAAUAAAAUAGUGGUGGUUUCAGCCUGCAGGGCUACAGCAGCAGCAUUUUGUUUUCCUCCAUUUGGUAGAAGGUGGCUACAACUCACCCCGAGUUCAUCUCUUUUGAUUUCGGUUGAAGCAGCCCUAGGCAACGUCUCUUGCCGUCAGCCCAAGACCUUGCUCCAUCUCUUGCCAUUAGCCCGAGGCCUUAGCCUCGCAUGACCCUACGUCCAGGUUGCUGCGAUGUGAGCGAAGUCCGGUGGAAGUUGGAGAAAAGGGGAGUGAAAAUAGAAAUCGAUUUCUGAGAUAGCUUUUGAGCUGAAAGAGAUUCGGAGAUUCCGGAGAGUAACGAGCCAUAUCCCGAGGAGGAUAGUGACUAUCCUCAGCAGCAAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.71%
ME_num:
MEP:
15.65%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.89
Avg Expression:
3.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.15641373037424 | 1.20698237905163e-20 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.25685666518562 | 8.30222475464976e-36 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.59606603651689 | 3.87812959825908e-29 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.30115214693059 | 2.70183343547361e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.65757770437593 | 5.79536927413809e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -9.67701086793728 | 2.8849736554095e-15 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.29484188004091 | 1.95341176102047e-10 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.8724014548736 | 2.71009450630503e-28 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.87458791113664 | 1.72208697517477e-44 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.12328402086886 | 3.0985152440921e-31 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -9.11253047523494 | 5.53129352100589e-14 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.2358025091468 | 9.93078801648696e-39 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.66461657985853 | 1.69899554304852e-30 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.67869107029437 | 0.041254680317267 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -8.25569390990545 | 1.52815331628948e-21 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | -1.08341753005014 | 3.46982010264473e-05 |