Chr:
Chr2
Start:
20607671
End:
20609851
Strand:
-
Ref_name:
LOC107279937
Sequence
(XR_001543001.2):
AAUUACGAAUUUCAGCUAUUUUUAGAUUGUAUUUCUAUUUUGACUCUUUUUUUCUUUUUCUCCGAUUCAUGUAGGAAUUUUUAGCCUCUACAGUGAACGUGGUGUCUUUUUUUAAGGUUGUUUUAAUAAUAGAUAGAUAGAUAUGUAGAUAUGACAUUGUUUACAUGUAUCGAAAAUAGUUAAAAUUCGCCGCCCUCCAUCUCGCCGCCGCCACCUCCCUCCGCCCGCCGCCCCUCCUCCCAUCACAUCGGUUUGCGCCGCCGCAUCCGCACCGCCCAGCCCCGCCACCACCGAGGACGCGGAACCCGCACCUCCCUCCCACGCCUCCCCCUCCAGACCCGAAGCAGCGGCAGCUCGCGGCGUCAACCUUCAUGCUUGACGACACCCCCCACCCCUCCGAAGCGGCGGCGGCCGCCGGUAGCUGCCGACUGGUCCGCCUCCGUGGUGGCCGAUGCGCCCCGGUCGUUCUUGCCGUGCUCGCUCCGCGACAGUCUGGUGAUACGCCCGAUUCUGUUCUCUCGAGCCCGUCGUUCCACCUCGACGCUCCCGAUUCCGCGACCCCUGGCUCGGAUGUCCCGUCCUCCGUCGGGCUUGACGAUAUUGUUCCUGAGACCUGAGACCGCGGGCUUCACCGCCCCACGCUUGGCUGGUCUCUCGGCUGUGCCUGGCUUGACGUCUCCUACGACCGCGAGGAAAUUUUCUGAUUGGAACAAGCUAAUCUUCUGCUCAAGAAAACACCAUUGUUGGAGAUGAUGACAAUUGUCCUCCACUGCUCCUGACCAUUCAAACAGGCAUGCACUUUCUUUUGCCGAUGGGUACAUAUUAUUGUGUUAUGCAUUUUAGCUACUUGAAUAAAAUAUCCUGUGAUUUUACAGGCAUGUGCUUUUGAAUUACCCUGUCUUUCCUGUAAUUAAUUUAAGUAGUACGCUAACUGAUUUGCACGAUCACAUGAAUGGCAGACUGUCAGAGUUCAUCGCUUCAAUAUUGUUUGGUGAUGUGAGAGCUAAGAUUAUUGUUUCCUUACUAGCAUAUAAAUUUAUUCCUGUAUAAGAAAUUAAGAAUAGCUGGUAUUUCAAACAUAUGGUCAUUUUGCUUGUCAUUCCCGCUUUUCUAUCUCCCAUUUUCCAUAAAUGCAUGACCCAAUGUUCCAAAGUACAGUUGCUAACAGAGCAUCAUUGCUUGCUUCCAGAACCAAUCUAGCCGACGGUUCUUACCAACCCAGUGCAGACUAACGCUGCCCUCGAUUUCUUUGAAGAUCUUUGAAAUUGAUGUUUUUUCUGGACUAUUGCCAUUGCAGAGGAAUUCAAAUGCAGCACCACUGAUCUGUACUCAUUUCUCUUUACAUAUGUUUUCACCAUUAAGAGGACCUGCUUCAAGAGAGAUGACCUCUGCUUUUGAGUUCUACGGUGCUUCCAAUUAAUAGUGAUUACCAAGCAACAAGCAAGAUAAAACAACUGCAUUUAUCUGUUACUUAUGGAAUUUAUCUGUUUAGAAAGCAAAUAGCAUUAUUGAUCAUCACUGAUCUGAUAUAUCAAUUUGUGGUGUACCAUAAGCUAGCAUGAUUUGCUUCAAAAGUUUAGCAAAACAAGUUAAGCUUGGAAGCCACUCAUUAACAAAAGAAGCUGAUUGUUUCUAUUUAGCAGGUUGACAGGAACAUGCUCCAUUUCAUGGUUUUGCUAAAUGAAGUGCGGUUGUCAUGAGAAAUCAGUGCAGAAUGGCAAGGUAGAUGCAAUUAUUCGAUCAGUGCAGAGAAAAUGGAGGCAAUGCUAGGGCAUAAUUUCUUCUAACUGUUUUUCCAUUCUUUCCCCUUUCGAUUGUACACUCAUGGUUGACACAUAUAUGUACAGUUCAGAUUUAUAAGUUGCAGCUAUGCCUUCAAUGGAUGAAAGUGGGCAUAUAUGUAUUUUUUUAGUUGGUUUUAAAGUGAGUGAUUUAUUUUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.11%
ME_num:
MEP:
80.49%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.62
Avg Expression:
2.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.56786121648504 | 2.71962610257381e-05 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.29537863825167 | 0.0146104084212876 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.3651124200562 | 0.0228864928986663 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.02832753653428 | 0.00128094459619716 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.66752368360469 | 0.0335499834002576 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.59934247081938 | 0.00167352694373773 |