Chr:
Chr2
Start:
17319743
End:
17323745
Strand:
+
Ref_name:
LOC107279922
Sequence
(XR_001542945.2):
UCAAACCAACUAGAGGAAUAUUUCUUUUGGAAAUUAUAUCCAAAUAUAAUUUCCUUCUGAACUCUCUCAUUCAAUUUUCCUUCAAAUUCAAACUAUCCAAAUCCUAUUCCAAAAUUUAGAAAUCAAUUGUUUUAGUUUGGACUGAAAAUUCCUCUUUUCUCCUUUCGGCCCAUCUCCCUCCUUGGCCCAUGUCGGCCCAGCUGAGCAGAGGCAGCCGCCCCUUUCACCUUUGUGGGCGCGCGCCCGACGCCGCCGCAACUGCCGUAAGCGGCUUUGUCACCGCCGCCCACAAUCCUGCCACCGCUGCUGCCGCCUUGCCGACCACGCCAAGCCGACGCCGUGCCGUGCACCUCUUUCCUCGCCGCCUAACUCCUCUGCGGCCGCCACGGGCACGCGCCGCCGUCGCCGACCAAUGGGAGAACGAAGCCGGCGCCGUCGUUCUCUUUCUCACGUCGCCGUCGCCAUAGCCAUGUCUCCCUUCUCCCCUCCAAACCGACUUUAGAAACCGACCUCCGCGGCCUAUAAAUAGACGAUGAGGUCGCCCCUUUCCUCCAUACACAUCCGAGCCUCGAGCUCUAUCUUUCUCUCUCUUCCCCAAUGCCGGCCGCUGGUCGAUCUCCUUCACUGGAGCCCUGCAGGCCAAGCCCUCGCGCCACUACCUUCGUCUCGAUGAGGCAAAUCUAUUCCCCUACUUGCCCCUUCCUUUUCCCCUCCGAGAUAAGCCACCGCCGCCGCCUCUUUUACCGGCCGAAACUGAGCUCGUAUUGUCGCCGUUCCGGCCGUUUCAACCUUCCUCUCUACCAGCCACCAACCUCCCCGAGUGCGCGUCGACCGGGAACACAAUAUGCCGCCGACGUCACCGCACUUUGGCCACUGGAAGCCCGGCUCCCCGCUCGCCCUUUUCUCUCCCUCUCUCUCUCUCUCGGCUCCUAAUUGAAGAGGAGGAGGUGACGGGAGGAAGAAGUAGAGGAGGAGAGAGAAAGAAAAGAAAAAUAAAAGAAAGGCUGACAGUAGAGUCUAUUAUACUUUGGAGGCAACCUGUGGUAUUUCGAGGAUCUGAUAACCAGGUUGCCUAUCUCGGAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCCUCCCCUUUGAGCAUAAUAUUCCUAUAUUAUAUAUCUCCAGUAUCUUGCGCAUUAGCCAUACAUGAUUUUGAAUGCAUAACUUGAACAUAUAGCAAACCAGAUAUAUGCUAGAUUUUGCUUAGCCAUGCCUAGUUAGAUUGCAUAAAAUAUAAUGAACUUAGAUUGGAACAGUACGGUAGAAAUGGUUGAUUUCCGGGUGGCUAGUACUGUUCCAACCGGCAUAAGACUGCCAAGUACAUGUGAAGAACAUACGAGUAUGACCGCAAUUCUCGUAUGGGCAUAGACCUAGCUGAUUAAGUUAUCUAGCAAAGGUGGUACCUCUGUAUAGUGGUUCUUCUUAAGUCCUCGCGUAGGAGGCAAAUUUAUGCCGCAAAGGGCAAUUAUGAUAUUUACCGAGGCGCAGGUAAAUAUACUUAUAUUGAUAGUCCAGGGGACUAUAUUAUGGCCAUGUGAUUUUGUGAACCCUGAUUGCGAUGACAUGGUGUCAUACAAUCAGUUCUCUCUAAAGACCUCGGGAACGCCAGAACUCCUCUCGCUGCUGAUAACGUUACGAUCAGAGCGCAUGGGGACUAGAGUUUAUGGAACAGGUACCACUCAUGUUAGUAACUGAAAAGCUUUGCCAUGACAAGGCUAAUGUGUUUGGCACAUCAUGGAUUGCGGGUAAAGCGUACAUCUACUGCAGUAUGAAUAUUCUUAAAACUAUUCGAAUAGCCGUGCUCGCAGUUAUCGGGCAUUGGGACUCAUAUGGCAUCUUGGAUAGAAACCUAAUUCGAAAUUUUAUUAAAUACUGCUGCAUUUAAAACAUUACAGGUUUUCUACUUUUACAUUCUCUGCUUUCUGCAAGUAAACCUAGCUUUACACAGAUAUUAUCAUUUCAUACAUUCAUUGUUGACUAAUAUAAUAGCUUGCUGAGUACGUUGUACUCACCCUUGCUUCAACCCCCCUUUUUCAAAGUCCAUUUGGAGUUUGUGCCGAAGCUGGGAGUUCAGUCAUAUAAGUUAAUUUCAUUUCAACCUAAUUCUCAAGUCUAGAUUAGAUAGAUGGUUUAAGUCUAUAGCCAAACAUUAGAGUUAAGUAAUUCUAUAGCUUCUGUUGUAUUAGUUAACCACAAAUUUGUAAAUACCUAUAUAUUUUGUAAUAAUAUCUCCUUUGGAGCCUUAUUCAAACGUAUGCAAUGAAGAUCCAGAUUGUUGAACCUGUAUCAAUUUACUAAUCUAGGGCUUGAUACAGUCUAAACAUGUCGGUUUCAGUUUCGGGUUGUUUCUUUGGACGUUCGUGGAUAAUUCAUGUUUAUGACUUCUAGAUGAUCCUAUGCGUAUUUAGUACUGUUGUGUGCUAACAAUAAGUCAAGUUGGAGAAAACUUGCUCGGAUAUGGUUUCUUGGUUGAUGCAUGUGUAGGUGAGUGUUGAUGCCUCGGGAGAGCGUUGCCGGUGAUGAUCGGGAGUCAAAUUGGGAGAAAAUGAUGUCCGUAUGAUCAAGAUAUCAUGCGGGAUACUUAGACUAAAGAUCAAUGCACGUGGUUAGUGAAGAUUCCAUAUAGCAUACGAUUGAGAUAUUGUGUGCAUAUGGAAUGCAGAGUCUGUUGAUGAUAUUCCCUAGAGGCAAUCAUAGAGAUGAUUGUAUCACAUACUAUGUUUACAUAUUUAUCCGACAUUGUUCCUUGAAAUAGAUAAUUCGUUAUUGGUUAAUGAAUAUGUGAUUCUUUCAUGAGACUUUUUUUGUUGUAUGCUGUUAUUUCUAAAGGAUCCCUGAUCAAAUAUCAGAUGUGGAACAAAUAUGUCUAAAUGAUUAGCACAUGUAUUGAUUGAUGAUCAUGUGUUAUGGAUCAUGGUAUGGAGAUAUCAAAUUAAUAAUGUGGACAUUUGUUGGGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.88%
ME_num:
MEP:
30.69%
HE_num:
HEP:
14.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.91
Avg Expression:
20.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.74539777158207 | 3.64387101650573e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.52198234815772 | 3.05914665183924e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.54450499575688 | 3.79492438093711e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.77561949800407 | 6.14997352218106e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -7.82955672578741 | 3.64798789410332e-10 |
| 6 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 4.99066205714271 | 0.000222253532149264 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.08030404777326 | 5.36859367637594e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.11397207189639 | 1.07556584388068e-13 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.79083159521397 | 0.000713310786205623 |
| 10 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.32108131274439 | 0.0130629096005594 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.72249582661366 | 0.0263457094802822 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 9.24144062560797 | 0 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.61925498301976 | 3.59101114033551e-62 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 2.59793377240128 | 6.67357113490406e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.78890256908041 | 9.34343265193725e-38 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.01867151382156 | 2.71163439900746e-65 |
| 17 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.07378327415426 | 3.12548771424029e-155 |
| 18 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.91449107748144 | 0.039479678893617 |
| 19 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 4.63410247588866 | 0.0031784641949552 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -9.1895262501241 | 7.60636248479714e-14 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.00554793349135 | 6.03369620224425e-28 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.59510966360031 | 6.4415585983698e-23 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 5.00692985741023 | 5.50864243219556e-34 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 3.56322302014041 | 0.0202149471631808 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.91409797079754 | 9.57208837978645e-30 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.11755767496135 | 2.12028927501454e-07 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.64903298692108 | 1.65419267714053e-09 |
| 28 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 8.32053624832653 | 1.33669332525844e-36 |
| 29 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.29911346793326 | 2.25939370335846e-26 |
| 30 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 8.3198758469677 | 1.35167838406686e-36 |
| 31 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 8.32035381208852 | 1.36378195940596e-36 |
| 32 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 8.38898846527987 | 8.43570355142294e-19 |
| 33 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.67058419197056 | 4.29701247637952e-05 |
| 34 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.20854173940535 | 0.00314866518379035 |
| 35 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 3.5097808807247 | 0.00731397739209992 |
| 36 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.27281319161188 | 2.33401233646371e-17 |
| 37 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.74823273721533 | 1.68320278277831e-67 |
| 38 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -7.36752151846824 | 5.84766370736976e-17 |