Chr:
Chr1
Start:
27033801
End:
27035786
Strand:
-
Ref_name:
LOC107279900
Sequence
(XR_001542839.2):
GCGAGGUCCCCUCUUUUUCACACAUCAUCAUAGCUUGAAGCUCUUCCUCUCUCUCCUCCCAUGGCCGAUCGUCGACGCCGUCGGUCGAUCUCCCCAUCCGUAGCUCCUCUUCCCCUCUCCUCGCACCACCGGCUUCGCCUCCAUCCGGCGAGUCCAUUUUUCCCCUUUCCCCUCUCCCUCCACCUCUAAGUCAAGUCACCACCACCAUCAUCCAUGCCGACUCAUGGUGAGCCCUUGCCGCCGCUGUUCCGGCCAUCUCCCUCACUCCCUCCACCUGCCACUACCCUCACCGGGUGCGCGUCGUCCGGGAACACGUGUGUCCGCCGGCGUCGCAACCUCUCGACCACCGGAGCACCGGCGCCCAACCUCUCUCUCCUCUGUGUUCUCGGCAGAAAGAAGAAGGAAAGAAGAAGACGGGAGAAGGAGAGAGAAAGAGAAAAGAAAAAGAAAAGGAGAACGGAGUGACAGAGUCUAUUUUAUUUUGGAUGGCAACCUGUGAUAUUUCGAGGAUUGGAUAAUAAGGUUGCUUAUCUCGGAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCCUCCCCUUGAGCAUAAUUACCCUAUAUUCUAUAUCUCUUUUCUAUGCAUUAGUCAUUCAUGAUUUUGAAUGCAUAACCUGAACAUAUAGCAAACCAGAUAUGCUAGCUUUUGCUUAGCCCUGCCUAGUUAGGCUGCAUAAAAAUAUAAUGAACCUAGAUUGGGACAGUACGUAAGAUUUGGUUGAUUUCUGGGUGGCUAGUACUGUCCCGGUCGAUAUAAUUGCCACCAAAUACUUAUGUCAAACGAACGAGUAUGACCACAGCUUCUUGAAUGGGGACAGACCUAGAUAUUAUGUUAAUUAGCAAUGUGGUACCUCUGUACAGUGGUUCCUUUUGUAAGUCCUCGCGCAAGAGGCAAUCUUAUGCCGAGCAGGGCAUCUUAUGAUAUUUACCGAGGCGCAGGUAAAUAUAUUGAUU
Sequence
(XR_003243864.1):
GCGAGGUCCCCUCUUUUUCACACAUCAUCAUAGCUUGAAGCUCUUCCUCUCUCUCCUCCCAUGGCCGAUCGUCGACGCCGUCGGUCGAUCUCCCCAUCCGUAGCUCCUCUUCCCCUCUCCUCGCACCACCGGCUUCGCCUCCAUCCGGCGAGUCCAUUUUUCCCCUUUCCCCUCUCCCUCCACCUCUAAGUCAAGUCACCACCACCAUCAUCCAUGCCGACUCAUGGUGAGCCCUUGCCGCCGCUGUUCCGGCCAUCUCCCUCACUCCCUCCACCUGCCACUACCCUCACCGGGUGCGCGUCGUCCGGGAACACGUGUGUCCGCCGGCGUCGCAACCUCUCGACCACCGGAGCACCGGCGCCCAACCUCUCUCUCCUCUGUGUUCUCGGCAGAAAGAAGAAGGAAAGAAGAAGACGGGAGAAGGAGAGAGAAAGAGAAAAGAAAAAGAAAAGGAGAACGGAGUGACAGUAGAGUCUAUUUUAUUUUGGAUGGCAACCUGUGAUAUUUCGAGGAUUGGAUAAUAAGGUUGCUUAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.82%
ME_num:
MEP:
42.07%
HE_num:
HEP:
18.9%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.83
Avg Expression:
11.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.71229381981773 | 6.20163838560431e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.4613439786718 | 2.84561196715809e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.74774064772168 | 0.00675300467140025 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.15076332996839 | 1.79830097100183e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.88736939541564 | 0.00166411772774086 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.45163734521536 | 0.00131959059242734 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.18078719202645 | 0.00370280572208317 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.80116302797728 | 1.91746758775991e-05 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.09835002549463 | 4.08452021657475e-21 |
| 10 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.49092145285434 | 0.0380704671533387 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.63670556442291 | 0.0187908010665815 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.37407665665946 | 6.96699842860161e-05 |
| 13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.66802255679068 | 0.00013862940642209 |
| 14 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.59432605906804 | 0.00010968002245968 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.83880426612417 | 2.47123157065388e-48 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.29246585499837 | 3.71393089952922e-24 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.6554724338779 | 0.0076357710580539 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.32833898997306 | 1.3438663531105e-15 |
| 19 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -5.03574355635775 | 9.41008073417894e-11 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.85188566265337 | 1.86033276314969e-36 |
| 21 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.08369443757009 | 4.33631848424428e-08 |
| 22 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.55836173299839 | 0.0123479419826612 |
| 23 | 9311 // leaf // control--/--9311 // leaf // salt | 2.50495988904178 | 6.98137475771319e-05 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.01408175243896 | 4.1245557214765e-05 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.35993523819878 | 1.24347620285307e-12 |
| 26 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.88732121722963 | 0.000483260255949429 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.63906860895662 | 0.000144095007418809 |
| 28 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.38211645696025 | 0.00175897179977044 |
| 29 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.81275933695907 | 1.98484157118962e-14 |
| 30 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.38204705852177 | 0.00177330392823244 |
| 31 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.38191380146937 | 0.0017649151599475 |
| 32 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.73370802855078 | 0.00182025798455932 |
| 33 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.89161242853881 | 0.0352551848297971 |
| 34 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.65672860474365 | 0.0305682633072929 |
| 35 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.02318401417829 | 3.83225069183712e-05 |
| 36 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.43766759014521 | 0.0101038914591495 |
| 37 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.09935754680089 | 0.000298049016912939 |