Chr:
Chr1
Start:
40619673
End:
40622109
Strand:
+
Ref_name:
LOC107279879
Sequence
(XR_001542686.2):
CAAGCCAAGCCCGAGCGACGCGACCGACCGACCGAUGGACCGACUCGGUCCGGUUGCUGUUGCCGGUUUGCGAAUGCGAAUUUCGUUUGCGUUCGAUUGGAUGGAUACAAGGGGAAGGAGGAGUUGUCGUACUCCCGCGGAGAUUUGUUCCUAACGAGUUGCAGCGAACACAGCCAUAACGGUAAGGUUACUAAGGGUGUGUUUGAGGAGAAGGAGAUUGGAGAGAUUGGGAAGAUACGCAAAACGAGGUGUUUAAAUGUUCGAUGUGACAUGUAAAAAAUUUUAGGUGGGAUCCAAACAAUGCCAAAGGGAAAAGAAAAGGAGAGAGAGAAAGAUUAAUCAAUUCAAUCAUGUGACAUUGAUGGCGACGGUGUGCAUUGCAUUUGCAUUUGCAUGGCUACAGCUGCAGAUCCCAGCACAGCAGCUGCAGCGCAGAGCCUGCAAAUCUGCCUGCAAACGGAGGCCAAAAAGGCCCAGAACCCGGGACGAGGAAUCCUCCUCCCCCCAUCUCCCUUCUCUGCGUGCGCCGCUCGCAUUCGCCUCCGCGACGCCUGCAUACAUCUGUCCUCCAUGCAUUGCCCCCACCAUUCGAUCUCCAUCGCUUUGUGCAGACAGGAGGAGGGGGGCAAAACGACGAGGGUUUUUUUUUUCCUUCACAGUGUAGAUCUCGUUCUUUUCUCAGAGUCUAACAGUUCGGUGUAAUGGUGGGAUGAAAAUGUAUGUGACAUGAGUCUCUAGUUAAGACAAUGUAGCGUACGAUUUCUGCGUAGCCACGUUCUAAAAAUAGAUACGAUUCGGAGUGGAUGAUUCGGAUAUGGAUAUUUUUCCUGUAUACGAAUAUGAAUACCCGAUGAAUAAUGCUAUUCGUAUAUCCAUUAAAGGUUUUGAAAUAUACCACAGUCCGUACCAAUUCUAGACAUUUAAUCUACUCCUUUCGUCCCAAAAUUUUGUGUGAUCAUACUUGUUUAUAUUUGAAGUUUAGGUGAUUUUCAUGUUUCGACAAAAUUUUUGUUUUUUUUGUGUUUGAUUAUGUUCAAUUAUUAUUUAUAUUUGACAUGAUUUAUAUUUAUUUUUGUAUGAGAUAUAAGUUUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.66%
ME_num:
MEP:
20.53%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
1.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.75160609370661 | 0.0285071651858416 |